School of Biological Sciences, Nanyang Technological University, Singapore. [corrected]
Biophys J. 2011 Mar 16;100(6):1550-8. doi: 10.1016/j.bpj.2011.02.010.
The abnormal self-assembly of a number of proteins or peptides is a hallmark of >20 amyloidogenic diseases. Recent studies suggest that the pathology of amyloidogenesis can be attributed primarily to cytotoxic, soluble, intermediate oligomeric species rather than to mature amyloid fibrils. Despite the lack of available structural information regarding these transient species, many therapeutic efforts have focused on inhibiting the formation of these aggregates. One of the most successful approaches has been to use small molecules, many of which have been found to inhibit toxic species with high efficacy. A significant issue that remains to be resolved is the mechanism underlying the inhibitory effects of these molecules. In this article, we present extensive replica-exchange molecular dynamics simulations to study the early aggregation of the human islet amyloid polypeptide segment 22-27 in the presence and absence of the small-molecule inhibitor resveratrol. The simulations indicate that aggregation of these peptides was hindered by resveratrol via a mechanism of blocking the lateral growth of a single-layered β-sheet oligomer (rather than preventing growth by elongation along the fibril axis). Intersheet side-chain stacking, especially stacking of the aromatic rings, was blocked by the presence of resveratrol molecules, and the overall aggregation level was reduced.
许多蛋白质或肽的异常自组装是 20 多种淀粉样变性疾病的标志。最近的研究表明,淀粉样变性的病理学主要归因于细胞毒性、可溶性、中间寡聚物种,而不是成熟的淀粉样纤维。尽管关于这些瞬态物种缺乏可用的结构信息,但许多治疗方法都集中在抑制这些聚集体的形成上。最成功的方法之一是使用小分子,其中许多被发现具有高效抑制毒性物种的作用。一个仍然需要解决的重要问题是这些分子抑制作用的机制。在本文中,我们进行了广泛的 replica-exchange 分子动力学模拟,以研究小分子抑制剂白藜芦醇存在和不存在的情况下人类胰岛淀粉样多肽片段 22-27 的早期聚集。模拟表明,白藜芦醇通过阻止单层 β-折叠寡聚物侧向生长的机制(而不是通过沿纤维轴伸长来阻止生长)阻碍了这些肽的聚集。层间侧链堆积,特别是芳环的堆积,被白藜芦醇分子所阻止,从而降低了整体聚集水平。