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具有可变细胞纵横比的集体细胞铺展模型:退化扩散模型的一个动机。

Models of collective cell spreading with variable cell aspect ratio: a motivation for degenerate diffusion models.

作者信息

Simpson Matthew J, Baker Ruth E, McCue Scott W

机构信息

Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Feb;83(2 Pt 1):021901. doi: 10.1103/PhysRevE.83.021901. Epub 2011 Feb 2.

Abstract

Continuum diffusion models are often used to represent the collective motion of cell populations. Most previous studies have simply used linear diffusion to represent collective cell spreading, while others found that degenerate nonlinear diffusion provides a better match to experimental cell density profiles. In the cell modeling literature there is no guidance available with regard to which approach is more appropriate for representing the spreading of cell populations. Furthermore, there is no knowledge of particular experimental measurements that can be made to distinguish between situations where these two models are appropriate. Here we provide a link between individual-based and continuum models using a multiscale approach in which we analyze the collective motion of a population of interacting agents in a generalized lattice-based exclusion process. For round agents that occupy a single lattice site, we find that the relevant continuum description of the system is a linear diffusion equation, whereas for elongated rod-shaped agents that occupy L adjacent lattice sites we find that the relevant continuum description is connected to the porous media equation (PME). The exponent in the nonlinear diffusivity function is related to the aspect ratio of the agents. Our work provides a physical connection between modeling collective cell spreading and the use of either the linear diffusion equation or the PME to represent cell density profiles. Results suggest that when using continuum models to represent cell population spreading, we should take care to account for variations in the cell aspect ratio because different aspect ratios lead to different continuum models.

摘要

连续介质扩散模型常用于描述细胞群体的集体运动。以往大多数研究只是简单地用线性扩散来表示细胞的集体扩散,而其他研究发现退化非线性扩散能更好地拟合实验细胞密度分布。在细胞建模文献中,对于哪种方法更适合表示细胞群体的扩散,没有可用的指导。此外,对于能够区分这两种模型适用情况的特定实验测量方法也一无所知。在这里,我们使用多尺度方法在基于个体的模型和连续介质模型之间建立联系,其中我们在广义的基于晶格的排除过程中分析相互作用的代理群体的集体运动。对于占据单个晶格位点的圆形代理,我们发现系统的相关连续介质描述是一个线性扩散方程,而对于占据(L)个相邻晶格位点的细长杆状代理,我们发现相关连续介质描述与多孔介质方程(PME)相关。非线性扩散率函数中的指数与代理的纵横比有关。我们的工作在模拟细胞集体扩散与使用线性扩散方程或PME来表示细胞密度分布之间建立了物理联系。结果表明,当使用连续介质模型来表示细胞群体扩散时,我们应注意考虑细胞纵横比的变化,因为不同的纵横比会导致不同的连续介质模型。

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