Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan, USA.
Biophys J. 2011 Apr 6;100(7):1617-26. doi: 10.1016/j.bpj.2011.02.014.
Signaling pathways consisting of phosphorylation/dephosphorylation cycles with no explicit feedback allow signals to propagate not only from upstream to downstream but also from downstream to upstream due to retroactivity at the interconnection between phosphorylation/dephosphorylation cycles. However, the extent to which a downstream perturbation can propagate upstream in a signaling cascade and the parameters that affect this propagation are presently unknown. Here, we determine the downstream-to-upstream steady-state gain at each stage of the signaling cascade as a function of the cascade parameters. This gain can be made smaller than 1 (attenuation) by sufficiently fast kinase rates compared to the phosphatase rates and/or by sufficiently large Michaelis-Menten constants and sufficiently low amounts of total stage protein. Numerical studies performed on sets of biologically relevant parameters indicated that ∼50% of these parameters could give rise to amplification of the downstream perturbation at some stage in a three-stage cascade. In an n-stage cascade, the percentage of parameters that lead to an overall attenuation from the last stage to the first stage monotonically increases with the cascade length n and reaches 100% for cascades of length at least 6.
由磷酸化/去磷酸化循环组成的信号通路,没有明确的反馈,不仅可以使信号从上游向下游传递,而且由于磷酸化/去磷酸化循环之间的相互作用,还可以使信号从下游向上游传递。然而,目前尚不清楚信号级联中下游的扰动可以在多大程度上向上游传播,以及影响这种传播的参数是什么。在这里,我们确定了信号级联中每个阶段的下游到上游的稳态增益作为级联参数的函数。与磷酸酶相比,激酶的速率足够快,或者米氏常数足够大,总级联蛋白的量足够低,可以使增益小于 1(衰减)。对一组具有生物学相关性的参数进行的数值研究表明,在三阶段级联中的某个阶段,大约 50%的这些参数可能导致下游扰动的放大。在 n 阶段级联中,从最后一个阶段到第一个阶段导致整体衰减的参数的百分比随着级联长度 n 的增加而单调增加,并且对于长度至少为 6 的级联,达到 100%。