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本文引用的文献

1
Substrate-dependent control of MAPK phosphorylation in vivo.体内 MAPK 磷酸化的底物依赖性控制。
Mol Syst Biol. 2011 Feb 1;7:467. doi: 10.1038/msb.2010.121.
2
Signaling properties of a covalent modification cycle are altered by a downstream target.共价修饰循环的信号特性被一个下游靶点改变。
Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10032-7. doi: 10.1073/pnas.0913815107. Epub 2010 May 17.
3
MAPK substrate competition integrates patterning signals in the Drosophila embryo.MAPK 底物竞争整合了果蝇胚胎中的模式信号。
Curr Biol. 2010 Mar 9;20(5):446-51. doi: 10.1016/j.cub.2010.01.019. Epub 2010 Feb 18.
4
On the role of cell signaling models in cancer research.论细胞信号传导模型在癌症研究中的作用。
Cancer Res. 2009 Jan 15;69(2):400-2. doi: 10.1158/0008-5472.CAN-08-4422.
5
A hidden feedback in signaling cascades is revealed.信号级联反应中的一种隐藏反馈被揭示出来。
PLoS Comput Biol. 2008 Mar 21;4(3):e1000041. doi: 10.1371/journal.pcbi.1000041.
6
Modular cell biology: retroactivity and insulation.模块化细胞生物学:追溯性与绝缘性
Mol Syst Biol. 2008;4:161. doi: 10.1038/msb4100204. Epub 2008 Feb 12.
7
Bistability and oscillations in the Huang-Ferrell model of MAPK signaling.丝裂原活化蛋白激酶(MAPK)信号转导的黄-费雷尔模型中的双稳性和振荡
PLoS Comput Biol. 2007 Sep;3(9):1819-26. doi: 10.1371/journal.pcbi.0030184. Epub 2007 Aug 6.
8
Substrate competition as a source of ultrasensitivity in the inactivation of Wee1.底物竞争作为Wee1失活中超敏感性的一个来源。
Cell. 2007 Mar 23;128(6):1133-45. doi: 10.1016/j.cell.2007.01.039.
9
Notch signaling in breast cancer and tumor angiogenesis: cross-talk and therapeutic potentials.Notch信号通路在乳腺癌与肿瘤血管生成中的作用:相互作用及治疗潜力
J Mammary Gland Biol Neoplasia. 2006 Jan;11(1):41-52. doi: 10.1007/s10911-006-9011-7.
10
The ERK cascade: a prototype of MAPK signaling.细胞外信号调节激酶级联反应:丝裂原活化蛋白激酶信号传导的一个原型。
Mol Biotechnol. 2005 Oct;31(2):151-74. doi: 10.1385/MB:31:2:151.

长信号级联往往会减弱反馈。

Long signaling cascades tend to attenuate retroactivity.

机构信息

Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan, USA.

出版信息

Biophys J. 2011 Apr 6;100(7):1617-26. doi: 10.1016/j.bpj.2011.02.014.

DOI:10.1016/j.bpj.2011.02.014
PMID:21463574
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3072653/
Abstract

Signaling pathways consisting of phosphorylation/dephosphorylation cycles with no explicit feedback allow signals to propagate not only from upstream to downstream but also from downstream to upstream due to retroactivity at the interconnection between phosphorylation/dephosphorylation cycles. However, the extent to which a downstream perturbation can propagate upstream in a signaling cascade and the parameters that affect this propagation are presently unknown. Here, we determine the downstream-to-upstream steady-state gain at each stage of the signaling cascade as a function of the cascade parameters. This gain can be made smaller than 1 (attenuation) by sufficiently fast kinase rates compared to the phosphatase rates and/or by sufficiently large Michaelis-Menten constants and sufficiently low amounts of total stage protein. Numerical studies performed on sets of biologically relevant parameters indicated that ∼50% of these parameters could give rise to amplification of the downstream perturbation at some stage in a three-stage cascade. In an n-stage cascade, the percentage of parameters that lead to an overall attenuation from the last stage to the first stage monotonically increases with the cascade length n and reaches 100% for cascades of length at least 6.

摘要

由磷酸化/去磷酸化循环组成的信号通路,没有明确的反馈,不仅可以使信号从上游向下游传递,而且由于磷酸化/去磷酸化循环之间的相互作用,还可以使信号从下游向上游传递。然而,目前尚不清楚信号级联中下游的扰动可以在多大程度上向上游传播,以及影响这种传播的参数是什么。在这里,我们确定了信号级联中每个阶段的下游到上游的稳态增益作为级联参数的函数。与磷酸酶相比,激酶的速率足够快,或者米氏常数足够大,总级联蛋白的量足够低,可以使增益小于 1(衰减)。对一组具有生物学相关性的参数进行的数值研究表明,在三阶段级联中的某个阶段,大约 50%的这些参数可能导致下游扰动的放大。在 n 阶段级联中,从最后一个阶段到第一个阶段导致整体衰减的参数的百分比随着级联长度 n 的增加而单调增加,并且对于长度至少为 6 的级联,达到 100%。