Suppr超能文献

长信号级联往往会减弱反馈。

Long signaling cascades tend to attenuate retroactivity.

机构信息

Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan, USA.

出版信息

Biophys J. 2011 Apr 6;100(7):1617-26. doi: 10.1016/j.bpj.2011.02.014.

Abstract

Signaling pathways consisting of phosphorylation/dephosphorylation cycles with no explicit feedback allow signals to propagate not only from upstream to downstream but also from downstream to upstream due to retroactivity at the interconnection between phosphorylation/dephosphorylation cycles. However, the extent to which a downstream perturbation can propagate upstream in a signaling cascade and the parameters that affect this propagation are presently unknown. Here, we determine the downstream-to-upstream steady-state gain at each stage of the signaling cascade as a function of the cascade parameters. This gain can be made smaller than 1 (attenuation) by sufficiently fast kinase rates compared to the phosphatase rates and/or by sufficiently large Michaelis-Menten constants and sufficiently low amounts of total stage protein. Numerical studies performed on sets of biologically relevant parameters indicated that ∼50% of these parameters could give rise to amplification of the downstream perturbation at some stage in a three-stage cascade. In an n-stage cascade, the percentage of parameters that lead to an overall attenuation from the last stage to the first stage monotonically increases with the cascade length n and reaches 100% for cascades of length at least 6.

摘要

由磷酸化/去磷酸化循环组成的信号通路,没有明确的反馈,不仅可以使信号从上游向下游传递,而且由于磷酸化/去磷酸化循环之间的相互作用,还可以使信号从下游向上游传递。然而,目前尚不清楚信号级联中下游的扰动可以在多大程度上向上游传播,以及影响这种传播的参数是什么。在这里,我们确定了信号级联中每个阶段的下游到上游的稳态增益作为级联参数的函数。与磷酸酶相比,激酶的速率足够快,或者米氏常数足够大,总级联蛋白的量足够低,可以使增益小于 1(衰减)。对一组具有生物学相关性的参数进行的数值研究表明,在三阶段级联中的某个阶段,大约 50%的这些参数可能导致下游扰动的放大。在 n 阶段级联中,从最后一个阶段到第一个阶段导致整体衰减的参数的百分比随着级联长度 n 的增加而单调增加,并且对于长度至少为 6 的级联,达到 100%。

相似文献

1
Long signaling cascades tend to attenuate retroactivity.
Biophys J. 2011 Apr 6;100(7):1617-26. doi: 10.1016/j.bpj.2011.02.014.
2
Signaling cascades transmit information downstream and upstream but unlikely simultaneously.
BMC Syst Biol. 2016 Aug 25;10(1):84. doi: 10.1186/s12918-016-0303-2.
4
Retroactivity induced operating regime transition in an enzymatic futile cycle.
PLoS One. 2021 Apr 30;16(4):e0250830. doi: 10.1371/journal.pone.0250830. eCollection 2021.
5
Open cascades as simple solutions to providing ultrasensitivity and adaptation in cellular signaling.
Phys Biol. 2011 Aug;8(4):046005. doi: 10.1088/1478-3975/8/4/046005. Epub 2011 May 12.
6
Signaling cascades: consequences of varying substrate and phosphatase levels.
Adv Exp Med Biol. 2012;736:81-94. doi: 10.1007/978-1-4419-7210-1_4.
7
Retroactive signaling in short signaling pathways.
PLoS One. 2012;7(7):e40806. doi: 10.1371/journal.pone.0040806. Epub 2012 Jul 26.
8
Signaling Architectures that Transmit Unidirectional Information Despite Retroactivity.
Biophys J. 2017 Aug 8;113(3):728-742. doi: 10.1016/j.bpj.2017.06.019.
9
Modular cell biology: retroactivity and insulation.
Mol Syst Biol. 2008;4:161. doi: 10.1038/msb4100204. Epub 2008 Feb 12.
10
The role of stochastic sequestration dynamics for intrinsic noise filtering in signaling network motifs.
J Theor Biol. 2018 Oct 14;455:86-96. doi: 10.1016/j.jtbi.2018.07.012. Epub 2018 Jul 11.

引用本文的文献

1
Dynamics and Sensitivity of Signaling Pathways.
Curr Pathobiol Rep. 2022 Jun;10(2):11-22. doi: 10.1007/s40139-022-00230-y. Epub 2022 Jun 27.
2
What Is the Trait d'Union between Retroactivity and Molecular Communication Performance Limits?
Molecules. 2022 May 13;27(10):3130. doi: 10.3390/molecules27103130.
3
Frequency-preference response in covalent modification cycles under substrate sequestration conditions.
NPJ Syst Biol Appl. 2021 Aug 17;7(1):32. doi: 10.1038/s41540-021-00192-8.
4
Retroactivity induced operating regime transition in an enzymatic futile cycle.
PLoS One. 2021 Apr 30;16(4):e0250830. doi: 10.1371/journal.pone.0250830. eCollection 2021.
7
Signaling Architectures that Transmit Unidirectional Information Despite Retroactivity.
Biophys J. 2017 Aug 8;113(3):728-742. doi: 10.1016/j.bpj.2017.06.019.
8
Dynamics robustness of cascading systems.
PLoS Comput Biol. 2017 Mar 13;13(3):e1005434. doi: 10.1371/journal.pcbi.1005434. eCollection 2017 Mar.
9
Modular bond-graph modelling and analysis of biomolecular systems.
IET Syst Biol. 2016 Oct;10(5):187-201. doi: 10.1049/iet-syb.2015.0083.
10
Signaling cascades transmit information downstream and upstream but unlikely simultaneously.
BMC Syst Biol. 2016 Aug 25;10(1):84. doi: 10.1186/s12918-016-0303-2.

本文引用的文献

1
Substrate-dependent control of MAPK phosphorylation in vivo.
Mol Syst Biol. 2011 Feb 1;7:467. doi: 10.1038/msb.2010.121.
2
Signaling properties of a covalent modification cycle are altered by a downstream target.
Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10032-7. doi: 10.1073/pnas.0913815107. Epub 2010 May 17.
3
MAPK substrate competition integrates patterning signals in the Drosophila embryo.
Curr Biol. 2010 Mar 9;20(5):446-51. doi: 10.1016/j.cub.2010.01.019. Epub 2010 Feb 18.
4
On the role of cell signaling models in cancer research.
Cancer Res. 2009 Jan 15;69(2):400-2. doi: 10.1158/0008-5472.CAN-08-4422.
5
A hidden feedback in signaling cascades is revealed.
PLoS Comput Biol. 2008 Mar 21;4(3):e1000041. doi: 10.1371/journal.pcbi.1000041.
6
Modular cell biology: retroactivity and insulation.
Mol Syst Biol. 2008;4:161. doi: 10.1038/msb4100204. Epub 2008 Feb 12.
7
Bistability and oscillations in the Huang-Ferrell model of MAPK signaling.
PLoS Comput Biol. 2007 Sep;3(9):1819-26. doi: 10.1371/journal.pcbi.0030184. Epub 2007 Aug 6.
8
Substrate competition as a source of ultrasensitivity in the inactivation of Wee1.
Cell. 2007 Mar 23;128(6):1133-45. doi: 10.1016/j.cell.2007.01.039.
9
Notch signaling in breast cancer and tumor angiogenesis: cross-talk and therapeutic potentials.
J Mammary Gland Biol Neoplasia. 2006 Jan;11(1):41-52. doi: 10.1007/s10911-006-9011-7.
10
The ERK cascade: a prototype of MAPK signaling.
Mol Biotechnol. 2005 Oct;31(2):151-74. doi: 10.1385/MB:31:2:151.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验