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PowerPlex® ESX 16 和 PowerPlex® ESX 17 系统的开发验证。

Developmental validation of the PowerPlex® ESX 16 and PowerPlex® ESX 17 Systems.

机构信息

Research & Development, Forensic Science Service, 2960 Trident Court, Birmingham Business Park, Solihull Parkway, Birmingham B37 7YN, UK.

出版信息

Forensic Sci Int Genet. 2012 Jan;6(1):124-31. doi: 10.1016/j.fsigen.2011.03.009. Epub 2011 Apr 3.

Abstract

We describe the developmental validation study performed on the PowerPlex(®) ESX 16 (European Standard Extended 16) and the PowerPlex(®) ESX 17 Systems, part of a suite of four new DNA profiling kits developed by Promega in response to the ENFSI and EDNAP groups' call for new STR multiplexes for Europe. The PowerPlex(®) ESX 16 System combines the 11 loci compatible with the UK National DNA Database, contained within the AmpFlSTR(®) SGM Plus(®) PCR Amplification Kit, with five additional loci: D2S441, D10S1248, D22S1045, D1S1656 and D12S391. The multiplex was designed to incorporate these five new loci as mini- and midi-STRs while maintaining the loci found in the AmpFlSTR(®) SGM Plus(®) kit as standard size. The PowerPlex(®) ESX 17 System amplifies the same loci as the PowerPlex(®) ESX 16 System, but with the addition of a primer pair for the SE33 locus. Tests were designed to address the developmental validation guidelines issued by the Scientific Working Group on DNA Analysis Methods (SWGDAM), and those of the DNA Advisory Board (DAB). Samples processed include DNA mixtures, PCR reactions spiked with inhibitors, a sensitivity series, and 306 United Kingdom donor samples to determine concordance with data generated with the AmpFlSTR(®) SGM Plus(®) kit. Allele frequencies from 242 white Caucasian samples collected in the United Kingdom are also presented. The PowerPlex(®) ESX 16 and ESX 17 Systems are robust and sensitive tools, suitable for the analysis of forensic DNA samples. Full profiles were routinely observed with 62.5 pg of a fully heterozygous single source DNA template. In mixture analysis, a range of 52-95% of unique minor contributor alleles was observed at 19:1 mixture ratios where only 25 pg of the minor component was present. Improved sensitivity combined with the robustness afforded by smaller amplicons has substantially improved the quantity of information obtained from degraded samples, and the improved chemistry confers exceptional tolerance to high levels of laboratory prepared inhibitors.

摘要

我们描述了 PowerPlex(®) ESX 16(欧洲标准扩展 16)和 PowerPlex(®) ESX 17 系统的开发验证研究,这是 Promega 响应 ENFSI 和 EDNAP 小组呼吁为欧洲开发新的 STR 多重扩增试剂盒而开发的四个新 DNA 分析试剂盒之一。PowerPlex(®) ESX 16 系统将与英国国家 DNA 数据库兼容的 11 个位点组合在一起,包含在 AmpFlSTR(®) SGM Plus(®) PCR 扩增试剂盒中,再加上 5 个额外的位点:D2S441、D10S1248、D22S1045、D1S1656 和 D12S391。该多重扩增试剂盒旨在将这 5 个新位点设计为迷你和中长 STR,同时保持 AmpFlSTR(®) SGM Plus(®)试剂盒中发现的位点为标准大小。PowerPlex(®) ESX 17 系统扩增与 PowerPlex(®) ESX 16 系统相同的位点,但增加了 SE33 位点的引物对。测试旨在满足 DNA 分析方法科学工作组 (SWGDAM) 以及 DNA 咨询委员会 (DAB) 发布的开发验证指南。处理的样本包括 DNA 混合物、掺入抑制剂的 PCR 反应、一个灵敏度系列和 306 个英国供体样本,以确定与使用 AmpFlSTR(®) SGM Plus(®)试剂盒生成的数据的一致性。还呈现了从英国收集的 242 个白种高加索样本的等位基因频率。PowerPlex(®) ESX 16 和 ESX 17 系统是强大且敏感的工具,适用于法医 DNA 样本的分析。在完全异质单源 DNA 模板 62.5 pg 时,可常规观察到完整的图谱。在混合物分析中,在仅存在 25 pg 次要成分的情况下,在 19:1 混合物比中观察到 52-95%的独特次要贡献者等位基因。灵敏度的提高与较小扩增子提供的稳健性相结合,大大提高了从降解样本中获得的信息量,改进的化学性质赋予了对实验室制备抑制剂的高水平的卓越容忍度。

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