• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用三维三阶电子光谱法提取 Fenna-Matthews-Olson 复合物的激子哈密顿量。

Extracting the excitonic Hamiltonian of the Fenna-Matthews-Olson complex using three-dimensional third-order electronic spectroscopy.

机构信息

Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois, USA.

出版信息

Biophys J. 2011 Apr 20;100(8):2043-52. doi: 10.1016/j.bpj.2010.12.3747.

DOI:10.1016/j.bpj.2010.12.3747
PMID:21504741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3077693/
Abstract

We extend traditional two-dimensional (2D) electronic spectroscopy into a third Fourier dimension without the use of additional optical interactions. By acquiring a set of 2D spectra evenly spaced in waiting time and dividing the area of the spectra into voxels, we can eliminate population dynamics from the data and transform the waiting time dimension into frequency space. The resultant 3D spectrum resolves quantum beating signals arising from excitonic coherences along the waiting frequency dimension, thereby yielding up to 2n-fold redundancy in the set of frequencies necessary to construct a complete set of n excitonic transition energies. Using this technique, we have obtained, to our knowledge, the first fully experimental set of electronic eigenstates for the Fenna-Matthews-Olson (FMO) antenna complex, which can be used to improve theoretical simulations of energy transfer within this protein. Whereas the strong diagonal peaks in the 2D rephasing spectrum of the FMO complex obscure all but one of the crosspeaks at 77 K, extending into the third dimension resolves 19 individual peaks. Analysis of the independently collected nonrephasing data provides the same information, thereby verifying the calculated excitonic transition energies. These results enable one to calculate the Hamiltonian of the FMO complex in the site basis by fitting to the experimental linear absorption spectrum.

摘要

我们将传统的二维(2D)电子光谱扩展到第三个傅里叶维度,而无需使用额外的光学相互作用。通过获取一组在等待时间上均匀间隔的 2D 光谱,并将光谱的面积划分为体素,我们可以从数据中消除种群动力学,并将等待时间维度转换为频率空间。所得的 3D 光谱解析了来自激子相干的量子拍频信号,沿着等待频率维度,从而在构建完整的 n 个激子跃迁能量集所需的频率集合中提供多达 2n 倍的冗余。使用这种技术,我们获得了迄今为止第一个 Fenna-Matthews-Olson(FMO)天线复合物的电子本征态的完整实验数据集,可用于改进该蛋白质内能量转移的理论模拟。虽然 FMO 复合物的 2D 重相位光谱中的强对角峰掩盖了 77 K 时所有除一个交叉峰之外的所有交叉峰,但扩展到第三个维度可解析 19 个单独的峰。对独立收集的非重相位数据的分析提供了相同的信息,从而验证了计算出的激子跃迁能量。这些结果使得可以通过拟合实验线性吸收光谱来计算 FMO 复合物在站点基础上的哈密顿量。

相似文献

1
Extracting the excitonic Hamiltonian of the Fenna-Matthews-Olson complex using three-dimensional third-order electronic spectroscopy.使用三维三阶电子光谱法提取 Fenna-Matthews-Olson 复合物的激子哈密顿量。
Biophys J. 2011 Apr 20;100(8):2043-52. doi: 10.1016/j.bpj.2010.12.3747.
2
Simulation of the two-dimensional electronic spectra of the Fenna-Matthews-Olson complex using the hierarchical equations of motion method.采用含时微扰理论方法模拟 Fenna-Matthews-Olson 复合物的二维电子能谱。
J Chem Phys. 2011 May 21;134(19):194508. doi: 10.1063/1.3589982.
3
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems.光合系统中通过量子相干进行波状能量转移的证据。
Nature. 2007 Apr 12;446(7137):782-6. doi: 10.1038/nature05678.
4
Simulated two-dimensional electronic spectroscopy of the eight-bacteriochlorophyll FMO complex.八细菌叶绿素FMO复合物的模拟二维电子光谱。
J Chem Phys. 2014 Dec 21;141(23):234105. doi: 10.1063/1.4903546.
5
Predictive First-Principles Modeling of a Photosynthetic Antenna Protein: The Fenna-Matthews-Olson Complex.光合天线蛋白的预测性第一性原理建模:芬纳-马修斯-奥尔森复合体
J Phys Chem Lett. 2020 Mar 5;11(5):1636-1643. doi: 10.1021/acs.jpclett.9b03486. Epub 2020 Feb 14.
6
Extracting dynamics of excitonic coherences in congested spectra of photosynthetic light harvesting antenna complexes.提取光合作用光捕获天线复合物拥挤光谱中激子相干的动力学。
Faraday Discuss. 2011;153:93-104; discussion 189-212. doi: 10.1039/c1fd00049g.
7
Visualization of excitonic structure in the Fenna-Matthews-Olson photosynthetic complex by polarization-dependent two-dimensional electronic spectroscopy.通过偏振相关二维电子光谱法可视化芬纳-马修斯-奥尔森光合复合物中的激子结构。
Biophys J. 2008 Jul;95(2):847-56. doi: 10.1529/biophysj.107.128199. Epub 2008 Mar 28.
8
From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex.从原子建模到 FMO 光捕获复合物的激发转移和二维光谱。
J Phys Chem B. 2011 Jul 7;115(26):8609-21. doi: 10.1021/jp202619a. Epub 2011 Jun 14.
9
Peak shape analysis of diagonal and off-diagonal features in the two-dimensional electronic spectra of the Fenna-Matthews-Olson complex.芬纳-马修斯-奥尔森复合物二维电子光谱中对角和非对角特征的峰形分析。
Philos Trans A Math Phys Eng Sci. 2012 Aug 13;370(1972):3692-708. doi: 10.1098/rsta.2011.0201.
10
Redox conditions correlated with vibronic coupling modulate quantum beats in photosynthetic pigment-protein complexes.氧化还原条件与振子耦合相关,调节光合色素-蛋白复合物中的量子拍。
Proc Natl Acad Sci U S A. 2021 Dec 7;118(49). doi: 10.1073/pnas.2112817118.

引用本文的文献

1
Single-scan acquisition of multiple multidimensional spectra.单次扫描采集多个多维光谱。
Optica. 2019;6(6). doi: 10.1364/optica.6.000735.
2
Quantum Entanglement and State-Transference in Fenna-Matthews-Olson Complexes: A Post-Experimental Simulation Analysis in the Computational Biology Domain.芬纳-马修斯-奥尔森复合物中的量子纠缠和态转移:计算生物学领域的后实验模拟分析。
Int J Mol Sci. 2023 Jun 29;24(13):10862. doi: 10.3390/ijms241310862.
3
Determining interchromophore effects for energy transport in molecular networks using machine-learning algorithms.利用机器学习算法确定分子网络中能量传递的发色团间相互作用。
Phys Chem Chem Phys. 2023 Feb 1;25(5):3651-3665. doi: 10.1039/d2cp04960k.
4
Redox conditions correlated with vibronic coupling modulate quantum beats in photosynthetic pigment-protein complexes.氧化还原条件与振子耦合相关,调节光合色素-蛋白复合物中的量子拍。
Proc Natl Acad Sci U S A. 2021 Dec 7;118(49). doi: 10.1073/pnas.2112817118.
5
Rapid multiple-quantum three-dimensional fluorescence spectroscopy disentangles quantum pathways.快速多量子三维荧光光谱解析量子途径。
Nat Commun. 2019 Oct 18;10(1):4735. doi: 10.1038/s41467-019-12602-x.
6
Quantum transport in the FMO photosynthetic light-harvesting complex.FMO光合捕光复合体中的量子输运
J Biol Phys. 2017 Jun;43(2):239-245. doi: 10.1007/s10867-017-9449-4. Epub 2017 Apr 4.
7
Nonlinear network model analysis of vibrational energy transfer and localisation in the Fenna-Matthews-Olson complex.费纳-马修斯-奥尔森复合物中振动能量转移与局域化的非线性网络模型分析
Sci Rep. 2016 Nov 9;6:36703. doi: 10.1038/srep36703.
8
Multidimensional spectroscopy of photoreactivity.多维度光反应光谱学。
Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4764-9. doi: 10.1073/pnas.1323792111. Epub 2014 Mar 17.
9
Chemical oxidation of the FMO antenna protein from Chlorobaculum tepidum.嗜热盐杆菌 FMO 天线蛋白的化学氧化。
Photosynth Res. 2013 Sep;116(1):11-9. doi: 10.1007/s11120-013-9878-2. Epub 2013 Jul 5.
10
Conformation of self-assembled porphyrin dimers in liposome vesicles by phase-modulation 2D fluorescence spectroscopy.通过相调制二维荧光光谱法研究脂质体囊泡中自组装卟啉二聚体的构象。
Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16521-6. doi: 10.1073/pnas.1017308108. Epub 2011 Sep 22.

本文引用的文献

1
Long-lived quantum coherence in photosynthetic complexes at physiological temperature.在生理温度下光合作用复合物中的长寿命量子相干性。
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12766-70. doi: 10.1073/pnas.1005484107. Epub 2010 Jul 6.
2
Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature.在环境温度下,光合海洋藻类中相干布线的光捕获。
Nature. 2010 Feb 4;463(7281):644-7. doi: 10.1038/nature08811.
3
Quantum coherence enabled determination of the energy landscape in light-harvesting complex II.量子相干使确定光捕获复合物 II 的能量景观成为可能。
J Phys Chem B. 2009 Dec 24;113(51):16291-5. doi: 10.1021/jp908300c.
4
Three-dimensional electronic spectroscopy of excitons in GaAs quantum wells.砷化镓量子阱中激子的三维电子光谱。
J Chem Phys. 2009 Oct 14;131(14):144510. doi: 10.1063/1.3245964.
5
Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature.生理温度下光合系统中量子相干性的理论研究。
Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17255-60. doi: 10.1073/pnas.0908989106. Epub 2009 Oct 7.
6
Role of quantum coherence and environmental fluctuations in chromophoric energy transport.量子相干和环境涨落在发色团能量转移中的作用。
J Phys Chem B. 2009 Jul 23;113(29):9942-7. doi: 10.1021/jp901724d.
7
Lindblad equations for strongly coupled populations and coherences in photosynthetic complexes.光合复合物中强耦合粒子数和相干性的林德布拉德方程。
J Chem Phys. 2009 May 28;130(20):204512. doi: 10.1063/1.3142485.
8
The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.来自不同绿硫细菌的FMO天线蛋白吸收光谱差异的结构基础。
Photosynth Res. 2009 May;100(2):79-87. doi: 10.1007/s11120-009-9430-6. Epub 2009 May 13.
9
Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting.基于质谱足迹法测定嗜温绿菌属嗜温光合细菌中FMO天线蛋白的膜取向
Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6134-9. doi: 10.1073/pnas.0901691106. Epub 2009 Apr 1.
10
Environment-assisted quantum walks in photosynthetic energy transfer.光合作用能量转移中的环境辅助量子行走。
J Chem Phys. 2008 Nov 7;129(17):174106. doi: 10.1063/1.3002335.