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用 MCMM 和从头算方法构建去质子化甘氨酸的第一个水合壳。

Building the first hydration shell of deprotonated glycine by the MCMM and ab initio methods.

机构信息

Institute of Photo-Biophysics, Physics and Electronics Department, Henan University, 475004, Kaifeng, China.

出版信息

J Phys Chem B. 2011 May 19;115(19):6213-21. doi: 10.1021/jp1117097. Epub 2011 Apr 21.

Abstract

The first hydration shell of the deprotonated glycine is built up by the discrete hydration model. The potential energy surfaces (PESs) of the deprotonated glycine and its hydration complexes with different number of water molecules have been scanned by the Monte Carlo multiple minimum (MCMM) conformational search analysis with the MMFFs force field. Then the energy-minimized structures are predicted using the high-level ab initio calculations/MP2/6-311++G(d,p). The results of the structural parameters and the infrared spectra indicate that the first-shell water molecules around the anion of deprotonated glycine play a more important role in determining the hydration process of deprotonated glycine. The competition between the hydrate site I and the hydrate site II represents a dynamic process of hydrated complexes. The vibrational properties of C═O and N-H are determined to characterize the structure of deprotonated glycine in solution by the discrete hydration model and the conductor-like polarizable continuum model (CPCM) in the gas phase, respectively.

摘要

去质子甘氨酸的第一水化壳由离散水化模型构建。用 MMFFs 力场的蒙特卡罗多最小值(MCMM)构象搜索分析扫描了去质子甘氨酸及其与不同水分子数的水合配合物的势能面(PESs)。然后使用高级从头算计算/MP2/6-311++G(d,p)预测能量最小化结构。结构参数和红外光谱的结果表明,去质子甘氨酸阴离子周围的第一壳层水分子在确定去质子甘氨酸的水合过程中起着更重要的作用。水合位点 I 和水合位点 II 之间的竞争代表了水合配合物的动态过程。通过离散水化模型和气相中的电导体相似极化连续体模型(CPCM)分别确定 C═O 和 N-H 的振动特性,以表征溶液中去质子甘氨酸的结构。

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