Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 98622, USA.
Phys Chem Chem Phys. 2012 Apr 14;14(14):4942-58. doi: 10.1039/c2cp23798a. Epub 2012 Mar 1.
We have theoretically investigated how the low-energy conformers of the neutral and the zwitterionic forms of glycine as well as methylcarbamic acid are stabilized by the presence water. The MP2/6-311++G(d,p) method was utilized to conduct calculations on glycine and methylcarbamic acid in both isolated clusters and in clusters embedded in the conductor-like polarizable continuum model (C-PCM), where the clusters explicitly contain between one and ten water molecules. The neutral forms of glycine and methylcarbamic acid were found to have similar hydration energies, whereas the neutral methylcarbamic acid was determined to be approximately 32 kJ mol(-1) more stable than the neutral glycine in the isolated clusters and 30 kJ mol(-1) more stable in the C-PCM embedded clusters. Both the number and strength of the hydrogen bonding interactions between water and the zwitterions drive the stability. This lowers the relative energy of the glycine zwitterion from 50 kJ mol(-1) above neutral glycine, when there are two water molecules in the clusters to 11 kJ mol(-1) below for the clusters containing ten water molecules. For the methylcarbamic acid clusters with two water molecules, the zwitterion is 51 kJ mol(-1) higher in energy than the neutral form, but it remains 13 kJ mol(-1) above the neutral methylcarbamic acid in the clusters containing ten water molecules. When the bulk water environment is simulated by the C-PCM calculations, we find both the methylcarbamic acid and glycine zwitterionic forms have similar energies at 20 kJ mol(-1) above the neutral methylcarbamic acid energy and 10 kJ mol(-1) lower than the neutral glycine energy. Although neither methylcarbamic acid nor glycine have been detected in the interstellar medium yet, our findings indicate that methylcarbamic acid is the more stable product from methylamine and carbon dioxide reactions in a water ice. This suggests that methylcarbamic acid likely plays a role in the intermediate steps if glycine is formed in the interstellar medium.
我们从理论上研究了中性和两性离子形式的甘氨酸以及甲基氨基甲酸在水存在下的低能构象如何稳定。我们利用 MP2/6-311++G(d,p) 方法对甘氨酸和甲基氨基甲酸在孤立簇和嵌入导体类似极化连续模型 (C-PCM) 的簇中进行了计算,其中簇中明确包含一到十个水分子。中性形式的甘氨酸和甲基氨基甲酸具有相似的水合能,而在孤立簇中,中性甲基氨基甲酸比中性甘氨酸稳定约 32 kJ mol(-1),在 C-PCM 嵌入簇中稳定约 30 kJ mol(-1)。水与两性离子之间氢键的数量和强度都驱动了稳定性。这将甘氨酸两性离子的相对能量从存在两个水分子的簇中比中性甘氨酸高 50 kJ mol(-1)降低到包含十个水分子的簇中比中性甘氨酸低 11 kJ mol(-1)。对于含有两个水分子的甲基氨基甲酸簇,两性离子的能量比中性形式高 51 kJ mol(-1),但在包含十个水分子的簇中,它仍比中性甲基氨基甲酸高出 13 kJ mol(-1)。当用 C-PCM 计算模拟体相水环境时,我们发现甲基氨基甲酸和甘氨酸两性离子形式的能量相似,均比中性甲基氨基甲酸的能量高 20 kJ mol(-1),比中性甘氨酸的能量低 10 kJ mol(-1)。虽然甲基氨基甲酸和甘氨酸尚未在星际介质中检测到,但我们的研究结果表明,在水冰中,甲基胺和二氧化碳的反应中,甲基氨基甲酸是更稳定的产物。这表明,如果在星际介质中形成甘氨酸,甲基氨基甲酸可能在中间步骤中发挥作用。