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通过宏基因组学挖掘海洋天然产物的隐藏多数派。

Accessing the hidden majority of marine natural products through metagenomics.

机构信息

College of Pharmacy, University of Utah, Salt Lake City, UT 84112, USA.

出版信息

Chembiochem. 2011 May 16;12(8):1230-6. doi: 10.1002/cbic.201000780. Epub 2011 May 3.

Abstract

Tiny marine animals represent an untapped reservoir for undiscovered, bioactive natural products. However, their small size and extreme chemical variability preclude traditional chemical approaches to discovering new bioactive compounds. Here, we use a metagenomic method to directly discover and rapidly access cyanobactin class natural products from these variable samples, and provide proof-of-concept for genome-based discovery and supply of marine natural products. We also address practical optimization of complex, multistep ribosomal peptide pathways in heterologous hosts, which is still very challenging. The resulting methods and concepts will be applicable to ribosomal peptide and other biosynthetic pathways.

摘要

微小的海洋动物代表了一个未被开发的、具有生物活性的天然产物库。然而,它们的体积小和极端的化学可变性排除了传统的化学方法来发现新的生物活性化合物。在这里,我们使用一种宏基因组学方法直接从这些可变的样本中发现和快速获得蓝细菌素类天然产物,并为基于基因组的海洋天然产物的发现和供应提供了概念验证。我们还解决了在异源宿主中复杂的多步核糖体肽途径的实际优化问题,这仍然是非常具有挑战性的。所得到的方法和概念将适用于核糖体肽和其他生物合成途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3939/3397154/1a547fdee209/nihms379169f1.jpg

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