• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Dps 家族蛋白“类铁蛋白样”孔中电荷分布对铁离子掺入过程的影响。

Effect of the charge distribution along the "ferritin-like" pores of the proteins from the Dps family on the iron incorporation process.

机构信息

Department of Biochemical Sciences, CNR Institute of Molecular Biology and Pathology, Sapienza University of Rome, Piazzale Aldo Moro, 5, 00185, Rome, Italy.

出版信息

J Biol Inorg Chem. 2011 Aug;16(6):869-80. doi: 10.1007/s00775-011-0784-9. Epub 2011 May 6.

DOI:10.1007/s00775-011-0784-9
PMID:21547575
Abstract

DNA-binding proteins from starved cells (Dps) differ in the number and position of charged residues along the "ferritin-like" pores that are used by iron to reach the ferroxidase center and the protein cavity. These differences are shown to affect significantly the electrostatic potential at the pores, which determines the extent of cooperativity in the iron uptake kinetics and thereby the mass distribution of the ferric hydroxide micelles inside the protein cavity. These conclusions are of biotechnological value in the preparation of protein-enclosed nanomaterials and are expected to apply also to ferritins. They were reached after characterization of the Dps from Listeria innocua, Helicobacter pylori, Thermosynechococcus elongatus, Escherichia coli, and Mycobacterium smegmatis. The characterization comprised the calculation of the electrostatic potential at the pores, determination of the iron uptake kinetics in the presence of molecular oxygen or hydrogen peroxide, and analysis of the proteins by means of the sedimentation velocity after iron incorporation.

摘要

饥饿细胞中的 DNA 结合蛋白(Dps)在“类铁蛋白”孔中的带电残基的数量和位置上存在差异,这些孔是铁到达亚铁氧化酶中心和蛋白质腔所必需的。这些差异显著影响了孔中的静电势,从而决定了铁摄取动力学中的协同程度,进而决定了蛋白质腔内部的氢氧化铁胶束的质量分布。这些结论在制备蛋白质包裹的纳米材料方面具有生物技术价值,预计也适用于铁蛋白。这些结论是在对无害李斯特菌、幽门螺杆菌、 elongatus 热球菌、大肠杆菌和耻垢分枝杆菌的 Dps 进行特性描述后得出的。这些特性描述包括计算孔中的静电势,确定在分子氧或过氧化氢存在下的铁摄取动力学,以及通过铁掺入后的沉降速度分析蛋白质。

相似文献

1
Effect of the charge distribution along the "ferritin-like" pores of the proteins from the Dps family on the iron incorporation process.Dps 家族蛋白“类铁蛋白样”孔中电荷分布对铁离子掺入过程的影响。
J Biol Inorg Chem. 2011 Aug;16(6):869-80. doi: 10.1007/s00775-011-0784-9. Epub 2011 May 6.
2
Iron translocation into and out of Listeria innocua Dps and size distribution of the protein-enclosed nanomineral are modulated by the electrostatic gradient at the 3-fold "ferritin-like" pores.铁进出无害李斯特菌Dps的转运以及蛋白质包裹的纳米矿物质的大小分布受三重“铁蛋白样”孔处的静电梯度调节。
J Biol Chem. 2009 Jul 10;284(28):19101-9. doi: 10.1074/jbc.M109.014670. Epub 2009 May 20.
3
The so-called Listeria innocua ferritin is a Dps protein. Iron incorporation, detoxification, and DNA protection properties.所谓的无害李斯特菌铁蛋白是一种Dps蛋白。具有铁掺入、解毒和DNA保护特性。
Biochemistry. 2005 Apr 19;44(15):5572-8. doi: 10.1021/bi0472705.
4
Antioxidant Dps protein from the thermophilic cyanobacterium Thermosynechococcus elongatus.来自嗜热蓝藻伸长聚球藻的抗氧化Dps蛋白。
FEBS J. 2006 Nov;273(21):4913-28. doi: 10.1111/j.1742-4658.2006.05490.x. Epub 2006 Oct 3.
5
Iron incorporation into Escherichia coli Dps gives rise to a ferritin-like microcrystalline core.铁掺入大肠杆菌Dps会形成类似铁蛋白的微晶核心。
J Biol Chem. 2002 Oct 4;277(40):37619-23. doi: 10.1074/jbc.M206186200. Epub 2002 Aug 5.
6
Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding protein of Escherichia coli.饥饿细胞中DNA结合蛋白的铁和过氧化氢解毒特性。大肠杆菌的一种铁蛋白样DNA结合蛋白。
J Biol Chem. 2002 Aug 2;277(31):27689-96. doi: 10.1074/jbc.M202094200. Epub 2002 May 16.
7
The unusual intersubunit ferroxidase center of Listeria innocua Dps is required for hydrogen peroxide detoxification but not for iron uptake. A study with site-specific mutants.无害李斯特菌Dps异常的亚基间铁氧化酶中心对于过氧化氢解毒是必需的,但对铁摄取并非必需。一项针对位点特异性突变体的研究。
Biochemistry. 2005 Apr 19;44(15):5579-87. doi: 10.1021/bi050005e.
8
A novel non-heme iron-binding ferritin related to the DNA-binding proteins of the Dps family in Listeria innocua.一种与无害李斯特菌中Dps家族的DNA结合蛋白相关的新型非血红素铁结合铁蛋白。
J Biol Chem. 1997 Feb 7;272(6):3259-65. doi: 10.1074/jbc.272.6.3259.
9
Iron incorporation in Streptococcus suis Dps-like peroxide resistance protein Dpr requires mobility in the ferroxidase center and leads to the formation of a ferrihydrite-like core.猪链球菌类Dps过氧化物抗性蛋白Dpr中铁的掺入需要在铁氧化酶中心具有流动性,并导致形成类水铁矿核心。
J Mol Biol. 2006 Nov 17;364(1):97-109. doi: 10.1016/j.jmb.2006.08.061. Epub 2006 Aug 26.
10
The dodecameric ferritin from Listeria innocua contains a novel intersubunit iron-binding site.无害李斯特菌的十二聚体铁蛋白含有一个新的亚基间铁结合位点。
Nat Struct Biol. 2000 Jan;7(1):38-43. doi: 10.1038/71236.

引用本文的文献

1
Rational pore engineering reveals the relative contribution of enzymatic sites and self-assembly towards rapid ferroxidase activity and mineralization: impact of electrostatic guiding and cage-confinement in bacterioferritin.合理的孔工程揭示了酶活性位点和自组装对快速铁氧化酶活性和矿化的相对贡献:静电引导和笼状限制在细菌铁蛋白中的作用。
Chem Sci. 2025 Jan 20;16(9):3978-3997. doi: 10.1039/d4sc07021f. eCollection 2025 Feb 26.
2
Zinc effects on bacteria: insights from by multi-omics approach.锌对细菌的影响:多组学方法的研究见解。
mSystems. 2023 Dec 21;8(6):e0073323. doi: 10.1128/msystems.00733-23. Epub 2023 Oct 31.
3

本文引用的文献

1
Silver ion incorporation and nanoparticle formation inside the cavity of Pyrococcus furiosus ferritin: structural and size-distribution analyses.银离子的掺入和纳米颗粒在 Pyrococcus furiosus 铁蛋白腔中的形成:结构和粒径分布分析。
J Am Chem Soc. 2010 Mar 17;132(10):3621-7. doi: 10.1021/ja910918b.
2
The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding.Dps蛋白应对细菌应激条件的多方面能力:铁和过氧化氢的解毒作用以及DNA结合。
Biochim Biophys Acta. 2010 Aug;1800(8):798-805. doi: 10.1016/j.bbagen.2010.01.013. Epub 2010 Feb 4.
3
Ferritin: A Promising Nanoreactor and Nanocarrier for Bionanotechnology.
铁蛋白:一种用于生物纳米技术的有前景的纳米反应器和纳米载体。
ACS Bio Med Chem Au. 2022 Mar 1;2(3):258-281. doi: 10.1021/acsbiomedchemau.2c00003. eCollection 2022 Jun 15.
4
Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom.类核相关蛋白塑造了整个细菌界的染色质结构和转录调控。
Transcription. 2021 Aug;12(4):182-218. doi: 10.1080/21541264.2021.1973865. Epub 2021 Sep 9.
5
Time-Resolved Studies of Ytterbium Distribution at Interfacial Surfaces of Ferritin-like Dps Protein Demonstrate Metal Uptake and Storage Pathways.铁蛋白样Dps蛋白界面表面镱分布的时间分辨研究揭示了金属摄取和储存途径。
Biomedicines. 2021 Jul 29;9(8):914. doi: 10.3390/biomedicines9080914.
6
Flavin-mediated reductive iron mobilization from frog M and Mycobacterial ferritins: impact of their size, charge and reactivities with NADH/O.黄素介导的从蛙 M 和分枝杆菌铁蛋白中还原铁的动员:其大小、电荷和与 NADH/O 反应性的影响。
J Biol Inorg Chem. 2021 May;26(2-3):265-281. doi: 10.1007/s00775-021-01850-2. Epub 2021 Feb 17.
7
The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria.来自鱼腥藻 ATCC 29133 的 Dps4 是 His 型 FOC 的一个成员,它包含 Dps 蛋白家族,在蓝藻中广泛存在。
PLoS One. 2019 Aug 1;14(8):e0218300. doi: 10.1371/journal.pone.0218300. eCollection 2019.
8
Differential biochemical properties of three canonical Dps proteins from the cyanobacterium suggest distinct cellular functions.三种经典 Dps 蛋白在蓝藻中的生化特性差异表明其具有不同的细胞功能。
J Biol Chem. 2018 Oct 26;293(43):16635-16646. doi: 10.1074/jbc.RA118.002425. Epub 2018 Aug 31.
9
Fe(2+) substrate transport through ferritin protein cage ion channels influences enzyme activity and biomineralization.亚铁离子通过铁蛋白蛋白笼离子通道的底物转运影响酶活性和生物矿化。
J Biol Inorg Chem. 2015 Sep;20(6):957-69. doi: 10.1007/s00775-015-1279-x. Epub 2015 Jul 23.
10
Moving Fe2+ from ferritin ion channels to catalytic OH centers depends on conserved protein cage carboxylates.将 Fe2+ 从铁蛋白离子通道转移到催化 OH 中心取决于保守的蛋白质笼羧酸根。
Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):7925-30. doi: 10.1073/pnas.1318417111. Epub 2014 May 19.
Role of Dps (DNA-binding proteins from starved cells) aggregation on DNA.
Dps(饥饿细胞中的 DNA 结合蛋白)在 DNA 上的聚集作用。
Front Biosci (Landmark Ed). 2010 Jan 1;15(1):122-31. doi: 10.2741/3610.
4
Synthesis of iron oxide nanoparticles in Listeria innocua Dps (DNA-binding protein from starved cells): a study with the wild-type protein and a catalytic centre mutant.在李斯特菌 Dps(饥饿细胞中的 DNA 结合蛋白)中合成氧化铁纳米颗粒:野生型蛋白和催化中心突变体的研究。
Chemistry. 2010 Jan 11;16(2):709-17. doi: 10.1002/chem.200901138.
5
I-TASSER: fully automated protein structure prediction in CASP8.I-TASSER:在 CASP8 中全自动的蛋白质结构预测。
Proteins. 2009;77 Suppl 9(Suppl 9):100-13. doi: 10.1002/prot.22588.
6
Preparation and catalytic reaction of Au/Pd bimetallic nanoparticles in apo-ferritin.脱铁铁蛋白中Au/Pd双金属纳米颗粒的制备及催化反应
Chem Commun (Camb). 2009 Aug 28(32):4871-3. doi: 10.1039/b908742g. Epub 2009 Jul 3.
7
Iron translocation into and out of Listeria innocua Dps and size distribution of the protein-enclosed nanomineral are modulated by the electrostatic gradient at the 3-fold "ferritin-like" pores.铁进出无害李斯特菌Dps的转运以及蛋白质包裹的纳米矿物质的大小分布受三重“铁蛋白样”孔处的静电梯度调节。
J Biol Chem. 2009 Jul 10;284(28):19101-9. doi: 10.1074/jbc.M109.014670. Epub 2009 May 20.
8
Synthesis of hybrid multicomponent disklike nanoparticles.杂化多组分盘状纳米颗粒的合成
Nano Lett. 2008 Nov;8(11):3964-72. doi: 10.1021/nl802467d. Epub 2008 Sep 24.
9
Unexpected high stiffness of Ag and Au nanoparticles.银和金纳米颗粒意外的高硬度。
Phys Rev Lett. 2008 Feb 1;100(4):045502. doi: 10.1103/PhysRevLett.100.045502. Epub 2008 Jan 28.
10
The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA.幽门螺杆菌的中性粒细胞激活蛋白Dps(HP-NAP)采用了一种不同于大肠杆菌Dps的机制来结合和凝聚DNA。
Nucleic Acids Res. 2007;35(7):2247-56. doi: 10.1093/nar/gkm077. Epub 2007 Mar 19.