Department of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697-3900, USA.
Proc Natl Acad Sci U S A. 2011 May 24;108(21):8623-7. doi: 10.1073/pnas.1102773108. Epub 2011 May 5.
Assembly of nitrogenase FeMoco is one of the key processes in bioinorganic chemistry. NifB and NifEN are two essential elements immediately adjacent to each other along the biosynthetic pathway of FeMoco. Previously, an 8Fe-precursor of FeMoco was identified on NifEN; however, the identity of the biosynthetic intermediate on NifB has remained elusive to date. Here, we present a combined biochemical and spectroscopic investigation of a His-tagged NifEN-B fusion protein of Azotobacter vinelandii. Our data from the EPR and activity analyses confirm the presence of the 8Fe-precursor in the NifEN entity of NifEN-B; whereas those from the metal, EPR, and UV/Vis experiments reveal the presence of additional [Fe(4)S(4)]-type cluster species in the NifB entity of NifEN-B. EPR-, UV/Vis- and metal-based quantitative analyses suggest that the newly identified cluster species in NifEN-B consist of both SAM-motif (CXXXCXXC)- and non-SAM-motif-bound [Fe(4)S(4)]-type clusters. Moreover, EPR and activity experiments indicate that the non-SAM-motif [Fe(4)S(4)] cluster is a NifB-bound intermediate of FeMoco assembly, which could be converted to the 8Fe-precursor in a SAM-dependent mechanism. Combined outcome of this work provides the initial insights into the biosynthetic events of FeMoco on NifB. More importantly, the full capacity of NifEN-B in FeMoco biosynthesis demonstrates the potential of this fusion protein as an excellent platform for further investigations of the role of NifB and its interaction with NifEN during the process of FeMoco assembly.
固氮酶 FeMoco 的组装是生物无机化学中的关键过程之一。NifB 和 NifEN 是沿 FeMoco 生物合成途径彼此相邻的两个必需元件。此前,已在 NifEN 上鉴定出 FeMoco 的 8Fe-前体;然而,迄今为止,NifB 上的生物合成中间体的身份仍难以捉摸。在这里,我们对来自 Azotobacter vinelandii 的带有 His 标签的 NifEN-B 融合蛋白进行了组合的生化和光谱研究。我们的 EPR 和活性分析数据证实了 8Fe-前体存在于 NifEN-B 的 NifEN 实体中;而来自金属、EPR 和 UV/Vis 实验的数据表明,在 NifEN-B 的 NifB 实体中存在额外的 [Fe(4)S(4)]-型簇物种。EPR、UV/Vis 和基于金属的定量分析表明,在 NifEN-B 中新鉴定的簇物种由 SAM 基序 (CXXXCXXC)-和非-SAM 基序结合的 [Fe(4)S(4)]-型簇组成。此外,EPR 和活性实验表明,非-SAM 基序 [Fe(4)S(4)]簇是 FeMoco 组装的 NifB 结合中间体,它可以在 SAM 依赖性机制下转化为 8Fe-前体。这项工作的综合结果为研究 NifB 上 FeMoco 的生物合成事件提供了初步的见解。更重要的是,NifEN-B 在 FeMoco 生物合成中的全部能力证明了这种融合蛋白作为进一步研究 NifB 及其在 FeMoco 组装过程中与 NifEN 相互作用的潜在优秀平台的潜力。