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5'-鸟苷三磷酸(5'-GTP)与自由基S-腺苷甲硫氨酸酶MoaA的C端铁硫簇结合,为其作用机制提供了见解。

Binding of 5'-GTP to the C-terminal FeS cluster of the radical S-adenosylmethionine enzyme MoaA provides insights into its mechanism.

作者信息

Hänzelmann Petra, Schindelin Hermann

机构信息

Department of Biochemistry and Center for Structural Biology, Stony Brook University, Stony Brook, NY 11794-5215, USA.

出版信息

Proc Natl Acad Sci U S A. 2006 May 2;103(18):6829-34. doi: 10.1073/pnas.0510711103. Epub 2006 Apr 21.

DOI:10.1073/pnas.0510711103
PMID:16632608
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1458979/
Abstract

The first step in molybdenum cofactor biosynthesis, the conversion of 5'-GTP to precursor Z, an oxygen-sensitive tetrahydropyranopterin is catalyzed by the S-adenosylmethionine (SAM)-dependent enzyme MoaA and the accessory protein MoaC. This reaction involves the radical-initiated intramolecular rearrangement of the guanine C8 atom. MoaA harbors an N-terminal [4Fe-4S] cluster, which is involved in the reductive cleavage of SAM and generates a 5'-deoxyadenosyl radical (5'-dA*), and a C-terminal [4Fe-4S] cluster presumably involved in substrate binding and/or activation. Biochemical studies identified residues involved in 5'-GTP binding and the determinants of nucleotide specificity. The crystal structure of MoaA in complex with 5'-GTP confirms the biochemical data and provides valuable insights into the subsequent radical reaction. MoaA binds 5'-GTP with high affinity and interacts through its C-terminal [4Fe-4S] cluster with the guanine N1 and N2 atoms, in a yet uncharacterized binding mode. The tightly anchored triphosphate moiety prevents the escape of radical intermediates. This structure also visualizes the L-Met and 5'-dA cleavage products of SAM. Rotation of the 5'-dA ribose and/or conformational changes of the guanosine are proposed to bring the 5'-deoxyadenosyl radical into close proximity of either the ribose C2' and C3' or the guanine C8 carbon atoms leading to hydrogen abstraction.

摘要

钼辅因子生物合成的第一步,即5'-鸟苷三磷酸(5'-GTP)转化为前体Z(一种对氧敏感的四氢吡喃蝶呤),由依赖S-腺苷甲硫氨酸(SAM)的酶MoaA和辅助蛋白MoaC催化。该反应涉及鸟嘌呤C8原子的自由基引发的分子内重排。MoaA含有一个N端[4Fe-4S]簇,其参与SAM的还原裂解并产生5'-脱氧腺苷自由基(5'-dA*),以及一个可能参与底物结合和/或激活的C端[4Fe-4S]簇。生化研究确定了参与5'-GTP结合的残基以及核苷酸特异性的决定因素。MoaA与5'-GTP复合物的晶体结构证实了生化数据,并为随后的自由基反应提供了有价值的见解。MoaA以高亲和力结合5'-GTP,并通过其C端[4Fe-4S]簇与鸟嘌呤的N1和N2原子相互作用,其结合模式尚不清楚。紧密锚定的三磷酸部分可防止自由基中间体逸出。该结构还显示了SAM的L-甲硫氨酸和5'-dA裂解产物。有人提出,5'-dA核糖的旋转和/或鸟苷的构象变化会使5'-脱氧腺苷自由基与核糖的C2'和C3'或鸟嘌呤的C8碳原子紧密接近,从而导致氢的提取。

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