相似文献
1
The role of indirect connections in gene networks in predicting function.
Bioinformatics. 2011 Jul 1;27(13):1860-6. doi: 10.1093/bioinformatics/btr288. Epub 2011 May 6.
2
Parametric Bayesian priors and better choice of negative examples improve protein function prediction.
Bioinformatics. 2013 May 1;29(9):1190-8. doi: 10.1093/bioinformatics/btt110. Epub 2013 Mar 19.
3
Integrating multi-network topology for gene function prediction using deep neural networks.
Brief Bioinform. 2021 Mar 22;22(2):2096-2105. doi: 10.1093/bib/bbaa036.
4
PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction.
Bioinformatics. 2012 May 1;28(9):1239-45. doi: 10.1093/bioinformatics/bts119. Epub 2012 Mar 13.
5
Biological Network Inference and analysis using SEBINI and CABIN.
Methods Mol Biol. 2009;541:551-76. doi: 10.1007/978-1-59745-243-4_24.
6
On predicting regulatory genes by analysis of functional networks in C. elegans.
BioData Min. 2015 Nov 2;8:33. doi: 10.1186/s13040-015-0066-0. eCollection 2015.
7
Structural systems identification of genetic regulatory networks.
Bioinformatics. 2008 Feb 15;24(4):553-60. doi: 10.1093/bioinformatics/btm623. Epub 2008 Jan 5.
8
Gene Function Prediction from Functional Association Networks Using Kernel Partial Least Squares Regression.
PLoS One. 2015 Aug 19;10(8):e0134668. doi: 10.1371/journal.pone.0134668. eCollection 2015.
9
Integration of molecular network data reconstructs Gene Ontology.
Bioinformatics. 2014 Sep 1;30(17):i594-600. doi: 10.1093/bioinformatics/btu470.
10
Network-based ranking methods for prediction of novel disease associated microRNAs.
Comput Biol Chem. 2015 Oct;58:139-48. doi: 10.1016/j.compbiolchem.2015.07.003. Epub 2015 Jul 21.
引用本文的文献
1
Uncertainty Quantification of Network Inference with Data Sufficiency.
IEEE Trans Netw Sci Eng. 2025 Sep-Oct;12(5):3600-3610. doi: 10.1109/tnse.2025.3563303. Epub 2025 Apr 22.
2
Introduction to correlation networks: Interdisciplinary approaches beyond thresholding.
Phys Rep. 2025 Aug 21;1136:1-39. doi: 10.1016/j.physrep.2025.06.002. Epub 2025 Jun 30.
3
Single-cell transcriptomes reveal cell-type-specific and sample-specific gene function in human cancer.
Heliyon. 2025 Jan 23;11(3):e42218. doi: 10.1016/j.heliyon.2025.e42218. eCollection 2025 Feb 15.
4
Defining the extent of gene function using ROC curvature.
Bioinformatics. 2022 Dec 13;38(24):5390-5397. doi: 10.1093/bioinformatics/btac692.
5
PARK7/DJ-1 promotes pyruvate dehydrogenase activity and maintains T homeostasis during ageing.
Nat Metab. 2022 May;4(5):589-607. doi: 10.1038/s42255-022-00576-y. Epub 2022 May 26.
6
Effects of the Developmental Regulator BOLITA on the Plant Metabolome.
Genes (Basel). 2021 Jun 29;12(7):995. doi: 10.3390/genes12070995.
7
Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches.
Netw Neurosci. 2021 Apr 27;5(2):373-404. doi: 10.1162/netn_a_00178. eCollection 2021.
8
Identification of VIMP as a gene inhibiting cytokine production in human CD4+ effector T cells.
iScience. 2021 Mar 9;24(4):102289. doi: 10.1016/j.isci.2021.102289. eCollection 2021 Apr 23.
9
Curation of over 10 000 transcriptomic studies to enable data reuse.
Database (Oxford). 2021 Feb 18;2021. doi: 10.1093/database/baab006.
10
DeORFanizing Candida albicans Genes using Coexpression.
mSphere. 2021 Jan 20;6(1):e01245-20. doi: 10.1128/mSphere.01245-20.
本文引用的文献
1
The impact of multifunctional genes on "guilt by association" analysis.
PLoS One. 2011 Feb 18;6(2):e17258. doi: 10.1371/journal.pone.0017258.
2
The genetic landscape of a cell.
Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823.
3
Predicting gene function using hierarchical multi-label decision tree ensembles.
BMC Bioinformatics. 2010 Jan 2;11:2. doi: 10.1186/1471-2105-11-2.
4
MINT, the molecular interaction database: 2009 update.
Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6.
5
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.
Methods Mol Biol. 2009;577:67-79. doi: 10.1007/978-1-60761-232-2_6.
6
High-throughput, quantitative analyses of genetic interactions in E. coli.
Nat Methods. 2008 Sep;5(9):781-7. doi: 10.1038/nmeth.1240.
7
iRefIndex: a consolidated protein interaction database with provenance.
BMC Bioinformatics. 2008 Sep 30;9:405. doi: 10.1186/1471-2105-9-405.
8
InnateDB: facilitating systems-level analyses of the mammalian innate immune response.
Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2.
9
Local coherence in genetic interaction patterns reveals prevalent functional versatility.
Bioinformatics. 2008 Oct 15;24(20):2376-83. doi: 10.1093/bioinformatics/btn440. Epub 2008 Aug 20.
10
Geometric interpretation of gene coexpression network analysis.
PLoS Comput Biol. 2008 Aug 15;4(8):e1000117. doi: 10.1371/journal.pcbi.1000117.
Zotero 插件