门多萨假单胞菌 NK-01 的全基因组，该菌能够合成中链长度聚羟基脂肪酸酯和褐藻寡糖。
Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides.
机构信息
Department of Microbiology, Nankai University, Tianjin 300071, China.
出版信息
J Bacteriol. 2011 Jul;193(13):3413-4. doi: 10.1128/JB.05068-11. Epub 2011 May 6.
Abstract
Pseudomonas mendocina NK-01 can synthesize medium-chain-length polyhydroxyalkanoate (PHA(MCL)) and alginate oligosaccharides (AO) simultaneously from glucose under conditions of limited nitrogen. Here, we report the complete sequence of the 5.4-Mbp genome of Pseudomonas mendocina NK-01, which was isolated from farmland soil in Tianjin, China.
摘要
门多萨假单胞菌 NK-01 可以在有限氮条件下从葡萄糖中同时合成中链长度多聚羟基烷酸酯（PHA(MCL)）和藻酸盐寡糖（AO）。在此，我们报告了来自中国天津农田土壤的门多萨假单胞菌 NK-01 的 5.4-Mbp 全基因组序列。
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本文引用的文献
1
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2
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
3
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
Detection of alginate oligosaccharides from mollusks.
Biosci Biotechnol Biochem. 2006 Nov;70(11):2793-6. doi: 10.1271/bbb.60313. Epub 2006 Nov 7.
6
Bacterial alginates: from biosynthesis to applications.
Biotechnol Lett. 2006 Nov;28(21):1701-12. doi: 10.1007/s10529-006-9156-x. Epub 2006 Aug 16.
7
The application of polyhydroxyalkanoates as tissue engineering materials.
Biomaterials. 2005 Nov;26(33):6565-78. doi: 10.1016/j.biomaterials.2005.04.036.
8
Preparation and structure elucidation of alginate oligosaccharides degraded by alginate lyase from Vibro sp. 510.
Carbohydr Res. 2004 Jun 1;339(8):1475-81. doi: 10.1016/j.carres.2004.03.010.
9
Biochemical and genetic analysis of PHA synthases and other proteins required for PHA synthesis.
Int J Biol Macromol. 1999 Jun-Jul;25(1-3):3-19. doi: 10.1016/s0141-8130(99)00010-0.
10
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
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