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GeneticStudio:一套用于遗传标记数据分析的程序。

GeneticStudio: a suite of programs for spatial analysis of genetic-marker data.

机构信息

Department of Biology, Virginia Commonwealth University, Richmond, Virginia 23284-2012, USA.

出版信息

Mol Ecol Resour. 2009 Jan;9(1):110-3. doi: 10.1111/j.1755-0998.2008.02384.x.

Abstract

The analysis of genetic marker data is increasingly being conducted in the context of the spatial arrangement of strata (e.g. populations) necessitating a more flexible set of analysis tools. GeneticStudio consists of four interacting programs: (i) Geno a spreadsheet-like interface for the analysis of spatially explicit marker-based genetic variation; (ii) Graph software for the analysis of Population Graph and network topologies, (iii) Manteller, a general purpose for matrix analysis program; and (iv) SNPFinder, a program for identifying single nucleotide polymorphisms. The GeneticStudio suite is available as source code as well as binaries for OSX and Windows and is distributed under the GNU General Public License.

摘要

遗传标记数据分析越来越多地在层(例如,种群)的空间排列的背景下进行,这需要更灵活的分析工具集。GeneticStudio 包含四个相互作用的程序:(i)Geno,一个用于分析基于空间显式标记的遗传变异的电子表格界面;(ii)Graph 软件,用于分析种群图和网络拓扑结构;(iii)Manteller,一个通用的矩阵分析程序;(iv)SNPFinder,一个用于识别单核苷酸多态性的程序。GeneticStudio 套件提供源代码以及适用于 OSX 和 Windows 的二进制文件,并根据 GNU 通用公共许可证分发。

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