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中国沿海地理分布广泛的骨螺科(腹足纲:新腹足目)的多基因条码和系统发育。

Multigene barcoding and phylogeny of geographically widespread muricids (Gastropoda: Neogastropoda) along the coast of China.

机构信息

Key Laboratory of Mariculture Ministry of Education, Ocean University of China, Qingdao 266003, China.

出版信息

Mar Biotechnol (NY). 2012 Feb;14(1):21-34. doi: 10.1007/s10126-011-9384-5. Epub 2011 May 24.

DOI:10.1007/s10126-011-9384-5
PMID:21607545
Abstract

The identification and phylogeny of muricids have been in a state of confusion for a long time due to the morphological convergence and plasticity. DNA-based identification and phylogeny methods often offer an analytically powerful addition or even an alternative. In this study, we employ a DNA barcoding method to identify 17 known and easily confused muricid species (120 individuals) from the whole China coast based on mitochondrial cytochrome c oxidase subunit I (COI) and 16S rRNA sequences, and nuclear ITS-1 and 28S rRNA sequences. The phylogeny of muricid subfamilies is also analysed based on all mitochondrial and nuclear sequences. The universal COI and 16S rRNA primers did not work broadly across the study group, necessitating the redesign of muricid specific COI and 16S rRNA primers in this paper. Our study demonstrates that COI gene is a suitable marker for barcoding muricids, which can distinguish all muricid species studied. Phylogenetic analysis of 16S rRNA, ITS-1 and 28S rRNA data also provide good support for the species resolution observed in COI data. The relationships of muricid subfamilies are resolved based on the separate and combined gene data that showed the monophyly of each the subfamilies Ergalataxinae, Rapaninae, Ocenebrinae and Muricinae, especially that Ergalataxinae did not fall within Rapaninae.

摘要

由于形态趋同和可塑性,藤壶科的鉴定和系统发育长期以来一直存在混乱。基于 DNA 的鉴定和系统发育方法通常提供了一种强大的分析补充,甚至是一种替代方法。在这项研究中,我们使用 DNA 条形码方法,基于线粒体细胞色素 c 氧化酶亚基 I(COI)和 16S rRNA 序列以及核 ITS-1 和 28S rRNA 序列,从中国沿海各地鉴定了 17 种已知的和容易混淆的藤壶科物种(120 个个体)。还基于所有线粒体和核序列分析了藤壶科亚科的系统发育。通用 COI 和 16S rRNA 引物在整个研究组中不能广泛使用,因此需要在本文中重新设计藤壶科特异性 COI 和 16S rRNA 引物。我们的研究表明,COI 基因是藤壶科条形码的合适标记,可以区分研究的所有藤壶科物种。16S rRNA、ITS-1 和 28S rRNA 数据的系统发育分析也为 COI 数据中观察到的物种分辨率提供了很好的支持。藤壶科亚科的关系是基于单独和组合基因数据来解决的,这些数据表明每个亚科的单系性,即 Ergalataxinae、Rapaninae、Ocenebrinae 和 Muricinae,特别是 Ergalataxinae 不属于 Rapaninae。

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High mitochondrial diversity in geographically widespread butterflies of Madagascar: a test of the DNA barcoding approach.马达加斯加广泛分布的蝴蝶中存在高度线粒体多样性:对DNA条形码方法的一项测试
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