Fenton Aron W, Alontaga Aileen Y
Department of Biochemistry and Molecular Biology, The University of Kansas Medical Center, Kansas City, Kansas, USA.
Methods Enzymol. 2009;466:83-107. doi: 10.1016/S0076-6879(09)66005-5. Epub 2009 Nov 13.
Experimental designs used to monitor the magnitude of an allosteric response can greatly influence observed values. We report here the impact of buffer, monovalent cation, divalent cation, and anion on the magnitude of the allosteric regulation of the affinity of human liver pyruvate kinase (hL-PYK) for substrate, phosphoenolpyruvate (PEP). The magnitudes of the allosteric activation by fructose-1,6-bisphosphate (Fru-1,6-BP) and the allosteric inhibition by alanine are independent of most, but not all buffers tested. However, these magnitudes are dependent on whether Mg(2+) or Mn(2+) is included as the divalent cation. In the presence of Mn(2+), any change in K(app-PEP) caused by Fru-1,6-BP is minimal. hL-PYK activity does not appear to require monovalent cation. Monovalent cation binding in the active site impacts PEP affinity with minimum influence on the magnitude of allosteric coupling. However, Na(+) and Li(+) reduce the magnitude of the allosteric response to Fru-1,6-BP, likely due to mechanisms outside of the active site. Which anion is used to maintain a constant monovalent cation concentration also influences the magnitude of the allosteric response. The value of determining the impact of ions on allosteric function can be appreciated by considering that representative structures used in comparative studies have often been determined using protein crystals grown in diverse buffer and salt conditions.
用于监测变构反应幅度的实验设计会极大地影响观测值。我们在此报告缓冲液、单价阳离子、二价阳离子和阴离子对人肝丙酮酸激酶(hL-PYK)对底物磷酸烯醇丙酮酸(PEP)亲和力的变构调节幅度的影响。果糖-1,6-二磷酸(Fru-1,6-BP)的变构激活幅度和丙氨酸的变构抑制幅度与大多数(但并非所有)测试缓冲液无关。然而,这些幅度取决于是否包含Mg(2+)或Mn(2+)作为二价阳离子。在存在Mn(2+)的情况下,Fru-1,6-BP引起的K(app-PEP)的任何变化都很小。hL-PYK活性似乎不需要单价阳离子。活性位点中的单价阳离子结合会影响PEP亲和力,对变构偶联幅度的影响最小。然而,Na(+)和Li(+)会降低对Fru-1,6-BP的变构反应幅度,这可能是由于活性位点之外的机制。用于维持恒定单价阳离子浓度的阴离子也会影响变构反应幅度。考虑到比较研究中使用的代表性结构通常是在不同缓冲液和盐条件下生长的蛋白质晶体确定的,就可以理解确定离子对变构功能影响的价值。