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分辨率为2.0埃的人R态高铁血红蛋白的结构。

Structure of human R-state aquomethemoglobin at 2.0 Å resolution.

作者信息

Yi Jun, Thomas Leonard M, Richter-Addo George B

机构信息

Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK 73019, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jun 1;67(Pt 6):647-51. doi: 10.1107/S1744309111012528. Epub 2011 May 24.

Abstract

The crystal structure of tetrameric (αβ)(2) R-state human adult aquomethemoglobin is reported at 2.0 Å resolution. The asymmetric unit contained one αβ subunit pair. The R-state crystal belonged to space group P4(1)2(1)2, with unit-cell parameters a = b = 53.6, c = 192.8 Å. An Fe-bound water molecule was modeled into the heme distal pockets of each of the α and β subunits. In the α subunit, a highly ordered liganded water was modeled with an Fe-O(water) distance of 2.2 Å and appears to be protected against escape from the distal pocket by the conformation of the heme propionate groups, which point upwards towards the distal His58 residue aided by a hydrogen-bonding network involving the solvent. In the β subunit, the liganded water exhibited greater motion and was modeled with a longer Fe-O(water) distance of 2.5 Å; in this subunit both propionate groups point downwards away from the distal His63 residue, presumably allowing greater motion of the liganded water in and out of the distal pocket.

摘要

报道了四聚体(αβ)₂ R态成人人类高铁血红蛋白的晶体结构,分辨率为2.0 Å。不对称单元包含一对αβ亚基。R态晶体属于空间群P4₁2₁2,晶胞参数a = b = 53.6,c = 192.8 Å。在α和β亚基的每个血红素远端口袋中都构建了一个与铁结合的水分子模型。在α亚基中,构建了一个高度有序的配位水模型,铁-氧(水)距离为2.2 Å,并且似乎受到血红素丙酸基团构象的保护,不会从远端口袋逸出,血红素丙酸基团在涉及溶剂的氢键网络的辅助下向上指向远端His58残基。在β亚基中,配位水表现出更大的运动性,并构建了一个更长的铁-氧(水)距离为2.5 Å的模型;在该亚基中,两个丙酸基团都向下指向远离远端His63残基的方向,大概这使得配位水能够在远端口袋内外有更大的运动性。

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