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核磁共振揭示的磷酸吡哆醛的关键氢键和质子化状态

Critical hydrogen bonds and protonation states of pyridoxal 5'-phosphate revealed by NMR.

作者信息

Limbach Hans-Heinrich, Chan-Huot Monique, Sharif Shasad, Tolstoy Peter M, Shenderovich Ilya G, Denisov Gleb S, Toney Michael D

机构信息

Institut für Chemie und Biochemie, Freie Universität Berlin, Takustraβe 3, D-14195, Germany.

出版信息

Biochim Biophys Acta. 2011 Nov;1814(11):1426-37. doi: 10.1016/j.bbapap.2011.06.004. Epub 2011 Jun 16.

DOI:10.1016/j.bbapap.2011.06.004
PMID:21703367
Abstract

In this contribution we review recent NMR studies of protonation and hydrogen bond states of pyridoxal 5'-phosphate (PLP) and PLP model Schiff bases in different environments, starting from aqueous solution, the organic solid state to polar organic solution and finally to enzyme environments. We have established hydrogen bond correlations that allow one to estimate hydrogen bond geometries from (15)N chemical shifts. It is shown that protonation of the pyridine ring of PLP in aspartate aminotransferase (AspAT) is achieved by (i) an intermolecular OHN hydrogen bond with an aspartate residue, assisted by the imidazole group of a histidine side chain and (ii) a local polarity as found for related model systems in a polar organic solvent exhibiting a dielectric constant of about 30. Model studies indicate that protonation of the pyridine ring of PLP leads to a dominance of the ketoenamine form, where the intramolecular OHN hydrogen bond of PLP exhibits a zwitterionic state. Thus, the PLP moiety in AspAT carries a net positive charge considered as a pre-requisite to initiate the enzyme reaction. However, it is shown that the ketoenamine form dominates in the absence of ring protonation when PLP is solvated by polar groups such as water. Finally, the differences between acid-base interactions in aqueous solution and in the interior of proteins are discussed. This article is part of a special issue entitled: Pyridoxal Phosphate Enzymology.

摘要

在本论文中,我们综述了近年来关于磷酸吡哆醛(PLP)及PLP模型席夫碱在不同环境中的质子化和氢键状态的核磁共振研究,研究环境从水溶液、有机固态到极性有机溶剂,最后到酶环境。我们建立了氢键相关性,可据此从¹⁵N化学位移估算氢键几何结构。结果表明,天冬氨酸转氨酶(AspAT)中PLP吡啶环的质子化是通过以下方式实现的:(i)与天冬氨酸残基形成分子间OHN氢键,并由组氨酸侧链的咪唑基团辅助;(ii)局部极性,这与极性有机溶剂中相关模型体系的情况类似,该有机溶剂的介电常数约为30。模型研究表明,PLP吡啶环的质子化导致酮式烯胺形式占主导,此时PLP的分子内OHN氢键呈现两性离子状态。因此,AspAT中的PLP部分带有净正电荷,这被认为是启动酶反应的先决条件。然而,研究表明,当PLP被水等极性基团溶剂化时,在没有环质子化的情况下酮式烯胺形式占主导。最后,讨论了水溶液和蛋白质内部酸碱相互作用的差异。本文是名为“磷酸吡哆醛酶学”的特刊的一部分。

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