Taniguchi Hisashi, Saito Mineo
Division of Mathematical and Physical Science, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
J Phys Condens Matter. 2009 Feb 11;21(6):064242. doi: 10.1088/0953-8984/21/6/064242. Epub 2009 Jan 20.
The effect of water on infrared (IR) spectra of DNA is studied by using first-principles calculations based on the hybrid density functional theory. Our calculations of frequencies of C = O stretching modes in DNA without water do not reproduce the IR spectra, whereas calculations for DNA surrounded by water reproduce the IR spectra well. We also find that the energy of adsorption of one water molecule around a C = O site is large ([Formula: see text] eV) owing to hydrogen bond formation. We therefore conclude that the effect of water plays an important role as regards IR spectra of DNA in a water solution.
通过基于杂化密度泛函理论的第一性原理计算,研究了水对DNA红外(IR)光谱的影响。我们对无水DNA中C = O伸缩模式频率的计算无法重现IR光谱,而对被水包围的DNA的计算能很好地重现IR光谱。我们还发现,由于氢键的形成,C = O位点周围一个水分子的吸附能量很大([公式:见原文] eV)。因此,我们得出结论,水的作用对于水溶液中DNA的IR光谱起着重要作用。