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NMR-NOE 和 MD 模拟研究磷脂膜:依赖于膜直径和多时间尺度动力学。

NMR-NOE and MD simulation study on phospholipid membranes: dependence on membrane diameter and multiple time scale dynamics.

机构信息

Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

出版信息

J Phys Chem B. 2011 Jul 28;115(29):9106-15. doi: 10.1021/jp204051f. Epub 2011 Jul 5.

Abstract

Motional correlation times between the hydrophilic and hydrophobic terminal groups in lipid membranes are studied over a wide range of curvatures using the solution-state (1)H NMR-nuclear Overhauser effect (NOE) and molecular dynamics (MD) simulation. To enable (1)H NMR-NOE measurements for large vesicles, the transient NOE method is combined with the spin-echo method, and is successfully applied to a micelle of 1-palmitoyl-lysophosphatidylcholine (PaLPC) with diameter of 5 nm and to vesicles of dipalmitoylphosphatidylcholine (DPPC) with diameters ranging from 30 to 800 nm. It is found that the NOE intensity increases with the diameter up to ∼100 nm, and the model membrane is considered planar on the molecular level beyond ∼100 nm. While the NOE between the hydrophilic terminal and hydrophobic terminal methyl groups is absent for the micelle, its intensity is comparable to that for the neighboring group for vesicles with larger diameters. The origin of NOE signals between distant sites is analyzed by MD simulations of PaLPC micelles and DPPC planar bilayers. The slow relaxation is shown to yield an observable NOE signal even for the hydrophilic and hydrophobic terminal sites. Since the information on distance and dynamics cannot be separated in the experimental NOE alone, the correlation time in large vesicles is determined by combining the experimental NOE intensity and MD-based distance distribution. For large vesicles, the correlation time is found to vary by 2 orders of magnitude over the proton sites. This study shows that NOE provides dynamic information on large vesicles when combined with MD, which provides structural information.

摘要

利用溶液态 (1)H NMR-核 Overhauser 效应 (NOE) 和分子动力学 (MD) 模拟,研究了脂质膜中亲水头基和疏水尾基之间的运动相关时间在宽曲率范围内的变化。为了使大囊泡能够进行 (1)H NMR-NOE 测量,我们将瞬态 NOE 方法与自旋回波方法相结合,并成功地应用于直径为 5nm 的 1-棕榈酰-溶血磷脂酰胆碱 (PaLPC) 胶束和直径为 30nm 至 800nm 的二棕榈酰磷脂酰胆碱 (DPPC) 囊泡。结果表明,NOE 强度随直径增加至约 100nm 而增加,并且在分子水平上,超过约 100nm 后模型膜被认为是平面的。虽然胶束中亲水端和疏水尾甲基之间的 NOE 是不存在的,但对于较大直径的囊泡,其强度可与相邻基团的强度相媲美。通过对 PaLPC 胶束和 DPPC 平面双层的 MD 模拟,分析了远距离位点之间的 NOE 信号的起源。结果表明,即使对于亲水和疏水末端位点,缓慢弛豫也会产生可观测的 NOE 信号。由于在实验性的 NOE 中,无法分离距离和动力学信息,因此在大囊泡中,相关时间是通过结合实验性的 NOE 强度和基于 MD 的距离分布来确定的。对于大囊泡,相关时间在质子位点上变化了两个数量级。这项研究表明,当与 MD 结合时,NOE 为大囊泡提供了动态信息,而 MD 则提供了结构信息。

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