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全基因组关联研究发现,双相情感障碍与基因附近区域的可重复关联明显富集。

Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.

机构信息

Scripps Genomic Medicine and Scripps Translational Science Institute, La Jolla, California, United States of America.

出版信息

PLoS Genet. 2011 Jun;7(6):e1002134. doi: 10.1371/journal.pgen.1002134. Epub 2011 Jun 30.

Abstract

Although a highly heritable and disabling disease, bipolar disorder's (BD) genetic variants have been challenging to identify. We present new genotype data for 1,190 cases and 401 controls and perform a genome-wide association study including additional samples for a total of 2,191 cases and 1,434 controls. We do not detect genome-wide significant associations for individual loci; however, across all SNPs, we show an association between the power to detect effects calculated from a previous genome-wide association study and evidence for replication (P = 1.5×10(-7)). To demonstrate that this result is not likely to be a false positive, we analyze replication rates in a large meta-analysis of height and show that, in a large enough study, associations replicate as a function of power, approaching a linear relationship. Within BD, SNPs near exons exhibit a greater probability of replication, supporting an enrichment of reproducible associations near functional regions of genes. These results indicate that there is likely common genetic variation associated with BD near exons (±10 kb) that could be identified in larger studies and, further, provide a framework for assessing the potential for replication when combining results from multiple studies.

摘要

尽管双相情感障碍(BD)是一种高度遗传性和致残性疾病,但要确定其遗传变异一直具有挑战性。我们提供了 1190 例病例和 401 例对照的新基因型数据,并进行了全基因组关联研究,包括额外的样本,总共涉及 2191 例病例和 1434 例对照。我们没有发现个体基因座的全基因组显著关联;然而,在所有 SNPs 中,我们显示了先前全基因组关联研究中计算效应检测能力与复制证据之间的关联(P=1.5×10(-7))。为了证明这一结果不太可能是假阳性,我们在一项关于身高的大型荟萃分析中分析了复制率,并表明在足够大的研究中,关联随着效应检测能力的增加而复制,接近线性关系。在 BD 中,外显子附近的 SNPs 表现出更高的复制概率,支持基因功能区域附近可重复关联的富集。这些结果表明,在外显子(±10 kb)附近可能存在与 BD 相关的常见遗传变异,可以在更大的研究中确定,进一步为在多个研究中结合结果时评估复制的可能性提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96ae/3128104/fb10e67fc1fa/pgen.1002134.g001.jpg

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