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2
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7
Modification of residue 42 of the active site loop with a lysine-mimetic side chain rescues isochorismate-pyruvate lyase activity in Pseudomonas aeruginosa PchB.活性位点环中残基 42 的赖氨酸类似物侧链修饰可恢复铜绿假单胞菌 PchB 中的异分支酸-丙酮酸裂解酶活性。
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8
Pericyclic reactions catalyzed by chorismate-utilizing enzymes.由支链氨基酸利用酶催化的周环反应。
Biochemistry. 2011 Sep 6;50(35):7476-83. doi: 10.1021/bi2009739. Epub 2011 Aug 12.

本文引用的文献

1
Entropic and enthalpic components of catalysis in the mutase and lyase activities of Pseudomonas aeruginosa PchB.铜绿假单胞菌 PchB 的变位酶和裂合酶活性中的催化熵变和焓变成分。
J Am Chem Soc. 2011 May 11;133(18):7229-33. doi: 10.1021/ja202091a. Epub 2011 Apr 19.
2
PHENIX: a comprehensive Python-based system for macromolecular structure solution.PHENIX:一个基于Python的用于大分子结构解析的综合系统。
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22.
3
XDS.XDS.(这个词如果没有更多背景信息,很难准确翻译出更有意义的内容,直接保留原文是一种处理方式,或者音译为“克斯达斯”之类,但感觉都不太符合常规翻译场景,你可以补充更多关于这个词的信息以便我更准确翻译 )
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32. doi: 10.1107/S0907444909047337. Epub 2010 Jan 22.
4
Mechanism and plasticity of isochorismate pyruvate lyase: a computational study.异羟肟酸丙酮酸裂解酶的机制和可塑性:计算研究。
J Am Chem Soc. 2009 Nov 11;131(44):16156-61. doi: 10.1021/ja905271g.
5
Structure-function analyses of isochorismate-pyruvate lyase from Pseudomonas aeruginosa suggest differing catalytic mechanisms for the two pericyclic reactions of this bifunctional enzyme.铜绿假单胞菌异分支酸-丙酮酸裂解酶的结构-功能分析表明,这种双功能酶的两个周环反应具有不同的催化机制。
Biochemistry. 2009 Jun 16;48(23):5239-45. doi: 10.1021/bi900456e.
6
Microbial production of (+)-trans-isochorismic acid.(+)-反式异分支酸的微生物生产。
Biotechnol Bioeng. 1995 Feb 20;45(4):285-91. doi: 10.1002/bit.260450402.
7
Detecting folding motifs and similarities in protein structures.检测蛋白质结构中的折叠基序和相似性。
Methods Enzymol. 1997;277:525-45. doi: 10.1016/s0076-6879(97)77029-0.
8
Free-energy landscape of enzyme catalysis.酶催化的自由能景观。
Biochemistry. 2008 Mar 18;47(11):3317-21. doi: 10.1021/bi800049z. Epub 2008 Feb 26.
9
High-accuracy computation of reaction barriers in enzymes.酶中反应势垒的高精度计算。
Angew Chem Int Ed Engl. 2006 Oct 20;45(41):6856-9. doi: 10.1002/anie.200602711.
10
Two crystal structures of the isochorismate pyruvate lyase from Pseudomonas aeruginosa.铜绿假单胞菌异分支酸丙酮酸裂解酶的两种晶体结构。
J Biol Chem. 2006 Nov 3;281(44):33441-9. doi: 10.1074/jbc.M605470200. Epub 2006 Aug 16.

铜绿假单胞菌异柠檬酸-丙酮酸裂解酶催化的 pH 依赖性:对过渡态稳定的影响及赖氨酸 42 的作用。

pH Dependence of catalysis by Pseudomonas aeruginosa isochorismate-pyruvate lyase: implications for transition state stabilization and the role of lysine 42.

机构信息

Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045, USA.

出版信息

Biochemistry. 2011 Aug 23;50(33):7198-207. doi: 10.1021/bi200599j. Epub 2011 Jul 22.

DOI:10.1021/bi200599j
PMID:21751784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3156872/
Abstract

An isochorismate-pyruvate lyase with adventitious chorismate mutase activity from Pseudomonas aerugionsa (PchB) achieves catalysis of both pericyclic reactions in part by the stabilization of reactive conformations and in part by electrostatic transition-state stabilization. When the active site loop Lys42 is mutated to histidine, the enzyme develops a pH dependence corresponding to a loss of catalytic power upon deprotonation of the histidine. Structural data indicate that the change is not due to changes in active site architecture, but due to the difference in charge at this key site. With loss of the positive charge on the K42H side chain at high pH, the enzyme retains lyase activity at ∼100-fold lowered catalytic efficiency but loses detectable mutase activity. We propose that both substrate organization and electrostatic transition state stabilization contribute to catalysis. However, the dominant reaction path for catalysis is dependent on reaction conditions, which influence the electrostatic properties of the enzyme active site amino acid side chains.

摘要

来自铜绿假单胞菌(PchB)的具有副鸽氨酸酶活性的异分支酸-丙酮酸裂合酶部分通过稳定反应构象和静电过渡态稳定来实现两种周环反应的催化。当活性位点环赖氨酸 42 突变为组氨酸时,酶会表现出与组氨酸去质子化时催化能力丧失相对应的 pH 依赖性。结构数据表明,这种变化不是由于活性位点结构的变化,而是由于该关键位点电荷的差异。在高 pH 下,K42H 侧链失去正电荷,酶保留裂解酶活性,但催化效率降低约 100 倍,且检测不到鸽氨酸酶活性。我们提出,底物组织和静电过渡态稳定都有助于催化。然而,催化的主要反应途径取决于反应条件,这些条件影响酶活性位点氨基酸侧链的静电性质。