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βXaaHisGlyHis 与铜(II)离子结合能力的量子化学研究。

A quantum-chemical study of the binding ability of βXaaHisGlyHis towards copper(II) ion.

机构信息

Department of Inorganic Chemistry, Faculty of Pharmacy, Wroclaw Medical University, Szewska 38, 50-139 Wrocław, Poland.

出版信息

J Mol Model. 2012 Apr;18(4):1365-74. doi: 10.1007/s00894-011-1162-9. Epub 2011 Jul 15.

DOI:10.1007/s00894-011-1162-9
PMID:21761180
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3313029/
Abstract

The present study analyzed binding of Cu(2+) to tetrapeptides in water solution at several levels of theoretical approximation. The methods used to study the energetic and structural properties of the complexes in question include semiempirical hamiltonians, density functional theory as well as ab initio approaches including electron correlation effects. In order to shed light on the character of interactions between Cu(2+) and peptides, which are expected to be mainly electrostatic in nature, decomposition of interaction energy into physically meaningful components was applied.

摘要

本研究在多个理论近似水平上分析了 Cu(2+)与四肽在水溶液中的结合。用于研究所涉及的配合物的能量和结构性质的方法包括半经验哈密顿量、密度泛函理论以及包括电子相关效应的从头计算方法。为了阐明 Cu(2+)与肽之间相互作用的性质,预期其主要是静电性质,因此将相互作用能分解为具有物理意义的分量。

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本文引用的文献

1
Assessment of Approximate Density Functional Methods for the Study of the Interactions of Al(III) with Aromatic Amino Acids.
J Chem Theory Comput. 2007 Sep;3(5):1830-6. doi: 10.1021/ct700027n.
2
Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.通过将约束满足方法与热化学、热化学动力学和非共价相互作用的参数化相结合来设计密度泛函
J Chem Theory Comput. 2006 Mar;2(2):364-82. doi: 10.1021/ct0502763.
3
Effect of metal Ions (Ni²⁺, Cu²⁺ and Zn²⁺) and water coordination on the structure of L-phenylalanine, L-tyrosine, L-tryptophan and their zwitterionic forms.金属离子(Ni²⁺、Cu²⁺和 Zn²⁺)和水配位对 L-苯丙氨酸、L-酪氨酸、L-色氨酸及其两性离子形式结构的影响。
J Mol Model. 2011 Dec;17(12):3117-28. doi: 10.1007/s00894-011-1000-0. Epub 2011 Mar 2.
4
On the metal ion (Zn(2+), Cu(2+)) coordination with beta-amyloid peptide: DFT computational study.金属离子(Zn(2+)、Cu(2+))与β-淀粉样肽的配位:DFT 计算研究。
Interdiscip Sci. 2010 Mar;2(1):57-69. doi: 10.1007/s12539-010-0086-x. Epub 2010 Jan 28.
5
The unusual coordination abilities of the peptides with betaXaaHisGlyHis sequence. The influence of structural modification of the peptide chain on the copper(II) binding.具有βXaaHisGlyHis 序列的肽的不寻常协调能力。肽链结构修饰对铜(II)结合的影响。
Dalton Trans. 2010 Jul 28;39(28):6518-23. doi: 10.1039/b923371g. Epub 2010 Jun 11.
6
Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+ and Zn2+) and water coordination on the structure and properties of L-histidine and zwitterionic L-histidine.金属离子(Li+、Na+、K+、Mg2+、Ca2+、Ni2+、Cu2+ 和 Zn2+)和水配位对 L-组氨酸和两性离子 L-组氨酸结构和性质的影响。
Amino Acids. 2010 Nov;39(5):1309-19. doi: 10.1007/s00726-010-0573-8. Epub 2010 Apr 3.
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10
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Phys Chem Chem Phys. 2009 Dec 14;11(46):10757-816. doi: 10.1039/b907148b. Epub 2009 Oct 21.