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一个调控核小体的结构特征

Structural features of a regulatory nucleosome.

作者信息

Piña B, Barettino D, Truss M, Beato M

机构信息

Institut für Molekularbiologie und Tumorforschung, Marburg, F.R.G.

出版信息

J Mol Biol. 1990 Dec 20;216(4):975-90. doi: 10.1016/S0022-2836(99)80015-1.

DOI:10.1016/S0022-2836(99)80015-1
PMID:2176242
Abstract

DNA sequences from the long terminal repeat of the mouse mammary tumor virus (MMTV-LTR) position nucleosomes both in vivo and in vitro. Here, were present chromatin reconstitution experiments showing that MMTV-LTR sequences from -236 to +204 accommodate two histone octamers in positions compatible with the in vivo data. This positioning is not influenced by the length of the DNA fragment and occurs in linear as well as in closed circular DNA molecules. MMTV-LTR DNA sequences show an intrinsic bendability that closely resembles its wrapping around the histone octamer. We propose that bendability is responsible for the observed rotational nucleosome positioning. Translational nucleosome positioning seems also to be determined by the DNA sequence. These data, along with the results from reconstitution experiments with insertion mutants, support a modular model of nucleosome phasing on MMTV-LTR, where the actual positioning of the histone octamer results from the additive effect of multiple features of the DNA sequence.

摘要

来自小鼠乳腺肿瘤病毒长末端重复序列(MMTV-LTR)的DNA序列在体内和体外都能定位核小体。在此,我们展示了染色质重建实验,结果表明,从-236到+204的MMTV-LTR序列在与体内数据相符的位置容纳两个组蛋白八聚体。这种定位不受DNA片段长度的影响,并且在线性以及闭环DNA分子中均会出现。MMTV-LTR DNA序列显示出一种内在的可弯曲性,这与它围绕组蛋白八聚体的包裹情况极为相似。我们认为,可弯曲性是观察到的旋转核小体定位的原因。平移核小体定位似乎也由DNA序列决定。这些数据,连同插入突变体重建实验的结果,支持了MMTV-LTR上核小体相位的模块化模型,其中组蛋白八聚体的实际定位是由DNA序列的多个特征的累加效应导致的。

相似文献

1
Structural features of a regulatory nucleosome.一个调控核小体的结构特征
J Mol Biol. 1990 Dec 20;216(4):975-90. doi: 10.1016/S0022-2836(99)80015-1.
2
Positioning and stability of nucleosomes on MMTV 3'LTR sequences.核小体在小鼠乳腺肿瘤病毒3'长末端重复序列上的定位与稳定性
J Mol Biol. 1998 Jan 23;275(3):427-41. doi: 10.1006/jmbi.1997.1464.
3
In vivo binding of proteins to stably integrated MMTV DNA in murine cell lines: occupancy of NFI and OTF1 binding sites in the absence and presence of glucocorticoids.蛋白质与小鼠细胞系中稳定整合的MMTV DNA的体内结合:在存在和不存在糖皮质激素的情况下NFI和OTF1结合位点的占有率
Cell Mol Biol Res. 1994;40(7-8):643-52.
4
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.与组蛋白八聚体高亲和力结合及序列导向核小体定位的新DNA序列规则。
J Mol Biol. 1998 Feb 13;276(1):19-42. doi: 10.1006/jmbi.1997.1494.
5
DNA rotational positioning in a regulatory nucleosome is determined by base sequence. An algorithm to model the preferred superhelix.调控核小体中DNA的旋转定位由碱基序列决定。一种用于模拟首选超螺旋的算法。
Nucleic Acids Res. 1990 Dec 11;18(23):6981-7. doi: 10.1093/nar/18.23.6981.
6
Nucleosome assembly on telomeric sequences.端粒序列上的核小体组装。
Biochemistry. 1998 May 12;37(19):6727-37. doi: 10.1021/bi9726180.
7
The mouse mammary tumour virus promoter positioned on a tetramer of histones H3 and H4 binds nuclear factor 1 and OTF1.位于组蛋白H3和H4四聚体上的小鼠乳腺肿瘤病毒启动子与核因子1和OTF1结合。
J Mol Biol. 1998 May 15;278(4):725-39. doi: 10.1006/jmbi.1998.1718.
8
Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames.
Genes Dev. 1995 Aug 1;9(15):1933-47. doi: 10.1101/gad.9.15.1933.
9
Nucleosomes reconstituted in vitro on mouse mammary tumor virus B region DNA occupy multiple translational and rotational frames.在小鼠乳腺肿瘤病毒B区DNA上体外重构的核小体占据多个翻译和旋转框架。
Biochemistry. 1995 Sep 26;34(38):12470-80. doi: 10.1021/bi00038a046.
10
Attraction, phasing and neighbour effects of histone octamers on curved DNA.组蛋白八聚体对弯曲DNA的吸引力、相位和邻近效应。
J Mol Biol. 1990 Nov 20;216(2):363-74. doi: 10.1016/S0022-2836(05)80327-4.

引用本文的文献

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Strategies for crystallizing a chromatin protein in complex with the nucleosome core particle.与核小体核心颗粒复合物中染色质蛋白的结晶策略。
Anal Biochem. 2013 Nov 15;442(2):138-45. doi: 10.1016/j.ab.2013.07.038. Epub 2013 Aug 6.
2
Complex genomic interactions in the dynamic regulation of transcription by the glucocorticoid receptor.糖皮质激素受体转录动态调控中的复杂基因组相互作用。
Mol Cell Endocrinol. 2013 Nov 5;380(1-2):16-24. doi: 10.1016/j.mce.2013.03.002. Epub 2013 Mar 14.
3
Control of nuclear receptor function by local chromatin structure.
局部染色质结构对核受体功能的调控。
FEBS J. 2011 Jul;278(13):2211-30. doi: 10.1111/j.1742-4658.2011.08126.x. Epub 2011 May 26.
4
Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene.多种序列导向的可能性为基因在不同活性状态下的核小体位置选择提供了一个库。
Epigenetics Chromatin. 2009 Mar 16;2(1):4. doi: 10.1186/1756-8935-2-4.
5
A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region.转录过程中对FACT的基因特异性需求与转录区域的染色质组织有关。
Mol Cell Biol. 2006 Dec;26(23):8710-21. doi: 10.1128/MCB.01129-06. Epub 2006 Sep 25.
6
CTCF binds the proximal exonic region of hTERT and inhibits its transcription.CTCF结合hTERT的近端外显子区域并抑制其转录。
Nucleic Acids Res. 2005 Dec 2;33(21):6850-60. doi: 10.1093/nar/gki989. Print 2005.
7
Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin.左手螺旋弯曲的DNA调控染色质中顺式DNA元件的可及性。
Nucleic Acids Res. 2003 Nov 15;31(22):6651-62. doi: 10.1093/nar/gkg854.
8
Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription.体内无经典反式激活因子时的转录起始:酵母管家腺苷酸激酶基因AKY2核心启动子侧翼的DNA弯折定位核小体并组成性激活转录。
Nucleic Acids Res. 2002 Oct 1;30(19):4199-207. doi: 10.1093/nar/gkf551.
9
A common feature shared by bent DNA structures locating in the eukaryotic promoter region.位于真核生物启动子区域的弯曲DNA结构所共有的一个特征。
Mol Biol Rep. 2001 Mar;28(1):53-61. doi: 10.1023/a:1011999730828.
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Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.核小体在次黄嘌呤磷酸核糖基转移酶(HPRT)启动子的活性等位基因上呈翻译定位,在非活性等位基因上呈旋转定位。
Mol Cell Biol. 2001 Nov;21(22):7682-95. doi: 10.1128/MCB.21.22.7682-7695.2001.