Georg-August-Universität Göttingen, Institut für Theoretische Physik, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany.
J Chem Phys. 2011 Jul 21;135(3):035104. doi: 10.1063/1.3610431.
Inspired by the complex influence of the globular crosslinking proteins on the formation of biofilament bundles in living organisms, we study and analyze a theoretical model for the structure and thermodynamics of bundles of helical filaments assembled in the presence of crosslinking molecules. The helical structure of filaments, a universal feature of biopolymers such as filamentous actin, is shown to generically frustrate the geometry of crosslinking between the "grooves" of two neighboring filaments. We develop a coarse-grained model to investigate the interplay between the geometry of binding and mechanics of both linker and filament distortion, and we show that crosslinking in parallel bundles of helical filaments generates intrinsic torques, of the type that tend to wind the bundle superhelically about its central axis. Crosslinking mediates a non-linear competition between the preference for bundle twist and the size-dependent mechanical cost of filament bending, which in turn gives rise to feedback between the global twist of self-assembled bundles and their lateral size. Finally, we demonstrate that above a critical density of bound crosslinkers, twisted bundles form with a thermodynamically preferred radius that, in turn, increases with a further increase in crosslinking bonds. We identify the stiffness of crosslinking bonds as a key parameter governing the sensitivity of bundle structure and assembly to the availability and affinity of crosslinkers.
受球状交联蛋白对生物体内原纤维束形成的复杂影响的启发,我们研究和分析了一个在交联分子存在下组装的螺旋丝束的结构和热力学的理论模型。丝的螺旋结构是丝状肌动蛋白等生物聚合物的普遍特征,它普遍阻碍了两个相邻丝的“凹槽”之间的交联几何形状。我们开发了一个粗粒化模型来研究结合几何形状和连接子以及丝扭曲的力学之间的相互作用,我们表明平行螺旋丝束中的交联会产生内在的扭矩,这种扭矩倾向于使束围绕其中心轴超螺旋缠绕。交联介导了束扭曲偏好和丝弯曲的尺寸相关力学成本之间的非线性竞争,这反过来又导致了自组装束的整体扭曲与其横向尺寸之间的反馈。最后,我们证明,在结合交联剂的临界密度以上,扭曲的束以热力学上优先的半径形成,而随着交联键的进一步增加,该半径也随之增加。我们将交联键的刚度确定为控制束结构和组装对交联剂的可用性和亲和力的敏感性的关键参数。