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评估暴露于水源饮用水的小鼠的转录组和代谢谱。

Evaluating the transcriptomic and metabolic profile of mice exposed to source drinking water.

机构信息

State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, Jiangsu 210046, China.

出版信息

Environ Sci Technol. 2012 Jan 3;46(1):78-83. doi: 10.1021/es201369x. Epub 2011 Aug 4.

Abstract

Transcriptomic and metabonomic methods were used to investigate mice's responses to drinking source water (DSW) exposure. After mice were fed with DSW for 90 days, hepatic transcriptome was characterized by microarray and serum metabonome were determined by (1)H nuclear magnetic resonance (NMR) spectroscopy. A total of 243 differentially expressed genes (DEGs) were identified, among which 141 genes were up-regulated and 102 genes were down-regulated. Metabonomics revealed significant changes in concentrations of creatine, pyruvate, glutamine, lysine, choline, acetate, lipids, taurine, and trimethylamine oxide. Four biological pathways were identified by Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis where both gene expression and metabolite concentrations were altered in response to DSW exposure. These results highlight the significance of combined use of transcriptomic and metabonomic approaches in evaluating potential health risk induced by DSW contaminated with various hazardous materials.

摘要

采用转录组学和代谢组学方法研究了小鼠对饮用水(DSW)暴露的反应。在小鼠用 DSW 喂养 90 天后,通过微阵列对其肝脏转录组进行了表征,并通过(1)H 核磁共振(NMR)光谱法测定了血清代谢组。共鉴定出 243 个差异表达基因(DEGs),其中 141 个基因上调,102 个基因下调。代谢组学揭示了肌酸、丙酮酸、谷氨酰胺、赖氨酸、胆碱、乙酸盐、脂质、牛磺酸和三甲胺氧化物浓度的显著变化。通过京都基因与基因组百科全书(KEGG)途径分析,发现了 4 个生物学途径,其中基因表达和代谢物浓度都因 DSW 暴露而发生改变。这些结果突出了联合使用转录组学和代谢组学方法评估受各种有害物质污染的 DSW 引起的潜在健康风险的重要性。

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