Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, Lawrence, Kansas, USA.
Biophys J. 2011 Aug 3;101(3):671-9. doi: 10.1016/j.bpj.2011.06.029.
This study aims to explore gating mechanisms of mechanosensitive channels in terms of membrane tension, membrane adaptation, protein conformation, and energetics. The large conductance mechanosensitive channel from Mycobacterium tuberculosis (Tb-MscL) is used as a model system; Tb-MscL acts as a safety valve by releasing small osmolytes through the channel opening under extreme hypoosmotic conditions. Based on the assumption that the channel gating involves tilting of the transmembrane (TM) helices, we have performed free energy simulations of Tb-MscL as a function of TM helix tilt angle in a dimyristoylphosphatidylcholine bilayer. Based on the change in system dimensions, TM helix tilting is shown to be essentially equivalent to applying an excess surface tension to the membrane, causing channel expansion, lipid adaptation, and membrane thinning. Such equivalence is further corroborated by the observation that the free energy cost of Tb-MscL channel expansion is comparable to the work done by the excess surface tension. Tb-MscL TM helix tilting results in an expanded water-conducting channel of an outer dimension similar to the proposed fully open MscL structure. The free energy decomposition indicates a possible expansion mechanism in which tilting and expanding of TM2 facilitates the iris-like motion of TM1, producing an expanded Tb-MscL.
本研究旨在从膜张力、膜适应、蛋白质构象和能量学角度探讨机械敏感通道的门控机制。以结核分枝杆菌(Mycobacterium tuberculosis,Tb)大电导机械敏感通道(Tb-MscL)为模型系统;在极端低渗条件下,Tb-MscL 通过通道打开释放小渗透物,充当安全阀。基于通道门控涉及跨膜(TM)螺旋倾斜的假设,我们对 DMPC 双层中 Tb-MscL 的 TM 螺旋倾斜角度进行了自由能模拟。根据系统尺寸的变化,TM 螺旋倾斜实质上等效于向膜施加过量表面张力,导致通道扩张、脂质适应和膜变薄。这种等效性进一步得到了证实,即 Tb-MscL 通道扩张的自由能成本与过量表面张力所做的功相当。Tb-MscL 的 TM 螺旋倾斜导致一个扩展的水导通道,其外部尺寸类似于提出的完全开放的 MscL 结构。自由能分解表明存在一种可能的扩张机制,其中 TM2 的倾斜和扩张有助于 TM1 的虹膜样运动,产生扩张的 Tb-MscL。