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本文引用的文献

1
Ecology and evolution of mammalian biodiversity.哺乳动物生物多样性的生态与进化。
Philos Trans R Soc Lond B Biol Sci. 2011 Sep 12;366(1577):2451-61. doi: 10.1098/rstb.2011.0090.
2
Toward an integrative historical biogeography.走向综合的历史生物地理学。
Integr Comp Biol. 2003 Apr;43(2):261-70. doi: 10.1093/icb/43.2.261.
3
Tracking marsupial evolution using archaic genomic retroposon insertions.利用古基因组反转录转座子插入追踪有袋类动物的进化。
PLoS Biol. 2010 Jul 27;8(7):e1000436. doi: 10.1371/journal.pbio.1000436.
4
Early Miocene hippopotamids (Cetartiodactyla) constrain the phylogenetic and spatiotemporal settings of hippopotamid origin.早中新世河马(偶蹄目)限定了河马起源的系统发育和时空背景。
Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11871-6. doi: 10.1073/pnas.1001373107. Epub 2010 Jun 14.
5
Bayesian dating of shallow phylogenies with a relaxed clock.使用松弛时钟对浅系谱进行贝叶斯日期推断。
Syst Biol. 2010 Mar;59(2):119-31. doi: 10.1093/sysbio/syp082. Epub 2009 Dec 10.
6
The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times.化石校准点表示法对贝叶斯估计种系分歧时间的影响。
Syst Biol. 2010 Jan;59(1):74-89. doi: 10.1093/sysbio/syp078. Epub 2009 Nov 25.
7
Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences.从多个核基因序列推断出哺乳动物食肉目多样化的模式和时间。
Mol Phylogenet Evol. 2010 Jul;56(1):49-63. doi: 10.1016/j.ympev.2010.01.033. Epub 2010 Feb 4.
8
New postcrania of Deccanolestes from the Late Cretaceous of India and their bearing on the evolutionary and biogeographic history of euarchontan mammals.来自印度晚白垩世的德干兽新颅后骨骼及其对真灵长总目哺乳动物进化和生物地理历史的影响。
Naturwissenschaften. 2010 Apr;97(4):365-77. doi: 10.1007/s00114-010-0648-0. Epub 2010 Feb 4.
9
Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals.松弛时钟方法在估计进化分歧时间及其置信区间方面的性能。
Mol Biol Evol. 2010 Jun;27(6):1289-300. doi: 10.1093/molbev/msq014. Epub 2010 Jan 21.
10
Mammalian biodiversity on Madagascar controlled by ocean currents.马达加斯加的哺乳动物多样性受洋流控制。
Nature. 2010 Feb 4;463(7281):653-6. doi: 10.1038/nature08706. Epub 2010 Jan 20.

哺乳动物的历史生物地理学。

The historical biogeography of Mammalia.

机构信息

Department of Biology, University of California, Riverside, CA 92521, USA.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2011 Sep 12;366(1577):2478-502. doi: 10.1098/rstb.2011.0023.

DOI:10.1098/rstb.2011.0023
PMID:21807730
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3138613/
Abstract

Palaeobiogeographic reconstructions are underpinned by phylogenies, divergence times and ancestral area reconstructions, which together yield ancestral area chronograms that provide a basis for proposing and testing hypotheses of dispersal and vicariance. Methods for area coding include multi-state coding with a single character, binary coding with multiple characters and string coding. Ancestral reconstruction methods are divided into parsimony versus Bayesian/likelihood approaches. We compared nine methods for reconstructing ancestral areas for placental mammals. Ambiguous reconstructions were a problem for all methods. Important differences resulted from coding areas based on the geographical ranges of extant species versus the geographical provenance of the oldest fossil for each lineage. Africa and South America were reconstructed as the ancestral areas for Afrotheria and Xenarthra, respectively. Most methods reconstructed Eurasia as the ancestral area for Boreoeutheria, Euarchontoglires and Laurasiatheria. The coincidence of molecular dates for the separation of Afrotheria and Xenarthra at approximately 100 Ma with the plate tectonic sundering of Africa and South America hints at the importance of vicariance in the early history of Placentalia. Dispersal has also been important including the origins of Madagascar's endemic mammal fauna. Further studies will benefit from increased taxon sampling and the application of new ancestral area reconstruction methods.

摘要

古生物地理重建是基于系统发育、分歧时间和祖先区域重建的,这些共同产生了祖先区域时间图表,为提出和检验扩散和隔离假说提供了基础。区域编码方法包括使用单个字符的多态性编码、使用多个字符的二进制编码和字符串编码。祖先重建方法分为简约法与贝叶斯/似然法。我们比较了 9 种用于重建胎盘哺乳动物祖先区域的方法。所有方法都存在模棱两可的重建问题。基于现存物种的地理范围对区域进行编码与基于每个谱系最古老化石的地理起源对区域进行编码之间的重要差异导致了结果的不同。非洲和南美洲分别被重建为非洲兽总目和有袋目动物的祖先区域。大多数方法将欧亚大陆重建为真兽类、啮形类和劳亚兽类的祖先区域。分子数据显示,非洲兽总目和有袋目动物大约在 1 亿年前分离,与非洲和南美洲的板块构造分裂时间一致,这暗示了隔离在胎盘类动物的早期历史中的重要性。扩散也很重要,包括马达加斯加特有哺乳动物区系的起源。进一步的研究将受益于增加分类群采样和应用新的祖先区域重建方法。