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抗疟治疗、反应特征和分子靶点的化学基因组特征分析。

Chemical genomic profiling for antimalarial therapies, response signatures, and molecular targets.

机构信息

Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

Science. 2011 Aug 5;333(6043):724-9. doi: 10.1126/science.1205216.

DOI:10.1126/science.1205216
PMID:21817045
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3396183/
Abstract

Malaria remains a devastating disease largely because of widespread drug resistance. New drugs and a better understanding of the mechanisms of drug action and resistance are essential for fulfilling the promise of eradicating malaria. Using high-throughput chemical screening and genome-wide association analysis, we identified 32 highly active compounds and genetic loci associated with differential chemical phenotypes (DCPs), defined as greater than or equal to fivefold differences in half-maximum inhibitor concentration (IC(50)) between parasite lines. Chromosomal loci associated with 49 DCPs were confirmed by linkage analysis and tests of genetically modified parasites, including three genes that were linked to 96% of the DCPs. Drugs whose responses mapped to wild-type or mutant pfcrt alleles were tested in combination in vitro and in vivo, which yielded promising new leads for antimalarial treatments.

摘要

疟疾仍然是一种毁灭性疾病,主要是因为广泛的药物耐药性。新的药物和更好地了解药物作用和耐药性的机制对于实现消除疟疾的承诺至关重要。我们使用高通量化学筛选和全基因组关联分析,鉴定出 32 种与化学表型差异(DCP)相关的高度活性化合物和遗传基因座,定义为寄生虫系之间半最大抑制剂浓度(IC(50))差异大于或等于五倍。通过连锁分析和对遗传修饰寄生虫的测试,确认了与 49 个 DCP 相关的染色体基因座,包括与 96%的 DCP 相关的三个基因。将药物反应映射到野生型或突变型 pfcrt 等位基因的药物在体外和体内进行联合测试,为抗疟治疗提供了有希望的新线索。

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本文引用的文献

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The NCGC pharmaceutical collection: a comprehensive resource of clinically approved drugs enabling repurposing and chemical genomics.NCGC 药物库:一个全面的临床批准药物资源,可用于药物重定位和化学生物基因组学。
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Association between the pfmdr1 gene and in vitro artemether and lumefantrine sensitivity in Thai isolates of Plasmodium falciparum.pfmdr1 基因与体外青蒿素和咯萘啶敏感性在泰国恶性疟原虫分离株中的关系。
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Spiroindolones, a potent compound class for the treatment of malaria.螺环吲哚酮类,一类用于疟疾治疗的强效化合物。
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Chemical genetics of Plasmodium falciparum.恶性疟原虫的化学遗传学
Nature. 2010 May 20;465(7296):311-5. doi: 10.1038/nature09099.
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Thousands of chemical starting points for antimalarial lead identification.数以千计的抗疟药物先导化合物化学起始点。
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Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs.恶性疟原虫全基因组范围的正选择、重组热点分析和抗疟药物耐药性研究。
Nat Genet. 2010 Mar;42(3):268-71. doi: 10.1038/ng.528. Epub 2010 Jan 31.
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Geographic patterns of Plasmodium falciparum drug resistance distinguished by differential responses to amodiaquine and chloroquine.疟原虫对阿莫地喹和氯喹的不同反应区分的疟原虫药物抗药性的地理模式。
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Genetic mapping of targets mediating differential chemical phenotypes in Plasmodium falciparum.介导恶性疟原虫不同化学表型的靶点的遗传图谱分析。
Nat Chem Biol. 2009 Oct;5(10):765-71. doi: 10.1038/nchembio.215. Epub 2009 Sep 6.