Department of Biology, Northeastern University, 313 Mugar Building, Boston, MA 02115, USA.
Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1425-1433. doi: 10.1099/ijs.0.034710-0. Epub 2011 Aug 12.
The majority of environmental micro-organisms identified with the rRNA approach have never been visualized. Thus, their reliable classification and taxonomic assignment is often difficult or even impossible. In our preliminary 18S rRNA gene sequencing work from the world's largest anoxic marine environment, the Cariaco Basin (Caribbean Sea, Venezuela), we detected a ciliate clade, designated previously as CAR_H [Stoeck, S., Taylor, G. T. & Epstein, S. S. (2003). Appl Environ Microbiol 63, 5656-5663]. Here, we combine the traditional rRNA detection method of fluorescent in situ hybridization (FISH) with scanning electron microscopy (SEM) and confirm the phylogenetic separation of the CAR_H sequences from all other ciliate classes by showing an outstanding morphological feature of this group: a unique, archway-shaped kinety surrounding the oral apparatus and extending to the posterior body end in CAR_H cells. Based on this specific feature and the molecular phylogenies, we propose a novel ciliate class, Cariacotrichea nov. cl.
大多数通过 rRNA 方法鉴定的环境微生物从未被可视化。因此,它们的可靠分类和分类归属通常是困难的,甚至是不可能的。在我们对世界上最大的缺氧海洋环境——加勒比海委内瑞拉卡里亚科盆地进行的初步 18S rRNA 基因测序工作中,我们检测到一个纤毛类群,以前被命名为 CAR_H [Stoeck, S., Taylor, G. T. & Epstein, S. S. (2003). Appl Environ Microbiol 63, 5656-5663]。在这里,我们将荧光原位杂交 (FISH) 的传统 rRNA 检测方法与扫描电子显微镜 (SEM) 相结合,并通过显示该组的一个突出的形态特征来证实 CAR_H 序列与所有其他纤毛类群的系统发育分离:在 CAR_H 细胞中,一个独特的拱形动基体围绕着口器延伸到身体后端。基于这一特定特征和分子系统发育,我们提出了一个新的纤毛类群,Cariacotrichea nov. cl.