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用于肽基核苷抗生素生物组装的化学逻辑和酶机制。

Chemical logic and enzymatic machinery for biological assembly of peptidyl nucleoside antibiotics.

机构信息

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, United States.

出版信息

ACS Chem Biol. 2011 Oct 21;6(10):1000-7. doi: 10.1021/cb200284p. Epub 2011 Aug 25.

DOI:10.1021/cb200284p
PMID:21851099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3199363/
Abstract

Peptidyl nucleoside antibiotics are a group of natural products targeting MraY, a bacterial translocase involved in the lipid-linked cycle in peptidoglycan biosynthesis. In this Perspective, we explore how Nature builds complex peptidyl nucleoside antibiotics scaffolds from simple nucleoside and amino acid building blocks. We discuss the current stage of research on biosynthetic pathways for peptidyl nucleoside antibiotics, primarily focusing on chemical logic and enzymatic machinery for uridine transformation and coupling to peptides. We further survey the nonribosomal biosynthetic paradigm for a subgroup of uridyl peptide antibiotics represented by pacidamycins, concluded by diversification opportunities for antibiotic optimization.

摘要

肽核苷抗生素是一组靶向 MraY 的天然产物,MraY 是一种参与肽聚糖生物合成中脂连接循环的细菌易位酶。在本观点中,我们探讨了自然界如何从简单的核苷和氨基酸构建块构建复杂的肽核苷抗生素支架。我们讨论了肽核苷抗生素生物合成途径的当前研究阶段,主要集中在尿苷转化和与肽偶联的化学逻辑和酶机制上。我们进一步调查了以 pacidamycins 为代表的尿嘧啶肽抗生素的非核糖体生物合成范例,最后讨论了抗生素优化的多样化机会。

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本文引用的文献

1
tRNA-dependent peptide bond formation by the transferase PacB in biosynthesis of the pacidamycin group of pentapeptidyl nucleoside antibiotics.PacB 转移酶在帕昔洛韦类五肽核苷抗生素生物合成中通过 tRNA 依赖性肽键形成。
Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12249-53. doi: 10.1073/pnas.1109539108. Epub 2011 Jul 11.
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Identification of phenylalanine 3-hydroxylase for meta-tyrosine biosynthesis.鉴定 meta-酪氨酸生物合成的苯丙氨酸 3-羟化酶。
Biochemistry. 2011 Jun 21;50(24):5401-3. doi: 10.1021/bi200733c. Epub 2011 May 31.
3
Nine enzymes are required for assembly of the pacidamycin group of peptidyl nucleoside antibiotics.九种酶对于放线菌酮类聚醚类抗生素的装配是必需的。
J Am Chem Soc. 2011 Apr 13;133(14):5240-3. doi: 10.1021/ja2011109. Epub 2011 Mar 18.
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Identification of a napsamycin biosynthesis gene cluster by genome mining.通过基因组挖掘鉴定那拉霉素生物合成基因簇。
Chembiochem. 2011 Feb 11;12(3):477-87. doi: 10.1002/cbic.201000460. Epub 2010 Dec 29.
5
Characterization of LipL as a non-heme, Fe(II)-dependent α-ketoglutarate:UMP dioxygenase that generates uridine-5'-aldehyde during A-90289 biosynthesis.鉴定 LipL 为一种非血红素铁(II)依赖的α-酮戊二酸:UMP 双加氧酶,它在 A-90289 生物合成过程中生成尿嘧啶 5'-醛。
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Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16828-33. doi: 10.1073/pnas.1011557107. Epub 2010 Sep 8.
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Chembiochem. 2010 Aug 16;11(12):1700-9. doi: 10.1002/cbic.201000200.
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