Símová Irena, Herben Tomás
Department of Botany, Faculty of Science, Charles University, Benátská 2, Praha 2, Czech Republic.
Proc Biol Sci. 2012 Mar 7;279(1730):867-75. doi: 10.1098/rspb.2011.1284. Epub 2011 Aug 31.
Plant nuclear genome size (GS) varies over three orders of magnitude and is correlated with cell size and growth rate. We explore whether these relationships can be owing to geometrical scaling constraints. These would produce an isometric GS-cell volume relationship, with the GS-cell diameter relationship with the exponent of 1/3. In the GS-cell division relationship, duration of processes limited by membrane transport would scale at the 1/3 exponent, whereas those limited by metabolism would show no relationship. We tested these predictions by estimating scaling exponents from 11 published datasets on differentiated and meristematic cells in diploid herbaceous plants. We found scaling of GS-cell size to almost perfectly match the prediction. The scaling exponent of the relationship between GS and cell cycle duration did not match the prediction. However, this relationship consists of two components: (i) S phase duration, which depends on GS, and has the predicted 1/3 exponent, and (ii) a GS-independent threshold reflecting the duration of the G1 and G2 phases. The matches we found for the relationships between GS and both cell size and S phase duration are signatures of geometrical scaling. We propose that a similar approach can be used to examine GS effects at tissue and whole plant levels.
植物核基因组大小(GS)在三个数量级上变化,并且与细胞大小和生长速率相关。我们探究这些关系是否可能归因于几何比例缩放限制。这将产生一种等距的GS-细胞体积关系,GS-细胞直径关系的指数为1/3。在GS-细胞分裂关系中,受膜运输限制的过程持续时间将按1/3指数缩放,而受代谢限制的过程则无相关性。我们通过从11个已发表的关于二倍体草本植物中分化细胞和分生细胞的数据集估计缩放指数来检验这些预测。我们发现GS-细胞大小的缩放几乎完全符合预测。GS与细胞周期持续时间之间关系的缩放指数与预测不匹配。然而,这种关系由两个部分组成:(i)S期持续时间,它取决于GS,具有预测的1/3指数,以及(ii)一个反映G1和G2期持续时间的与GS无关的阈值。我们发现的GS与细胞大小和S期持续时间之间关系的匹配是几何比例缩放的特征。我们提出可以使用类似的方法来研究GS在组织和整株植物水平上的影响。