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嗜盐性极强的前盛行哈氏厌氧杆菌模式菌株(GSL)的全基因组序列

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL).

作者信息

Ivanova Natalia, Sikorski Johannes, Chertkov Olga, Nolan Matt, Lucas Susan, Hammon Nancy, Deshpande Shweta, Cheng Jan-Fang, Tapia Roxanne, Han Cliff, Goodwin Lynne, Pitluck Sam, Huntemann Marcel, Liolios Konstantinos, Pagani Ioanna, Mavromatis Konstantinos, Ovchinikova Galina, Pati Amrita, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Brambilla Evelyne-Marie, Kannan K Palani, Rohde Manfred, Tindall Brian J, Göker Markus, Detter John C, Woyke Tanja, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter, Lapidus Alla

出版信息

Stand Genomic Sci. 2011 Jul 1;4(3):312-21. doi: 10.4056/sigs.1824509. Epub 2011 Jun 30.

Abstract

Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

Prevotella praevalens Zeikus等人于1984年发现,它是Prevotella属的模式种,而Prevotella属又是Halanaerobiaceae科的模式属。该物种备受关注,因为它能够快速还原多种硝基取代的芳香族化合物,并且具有降解有机污染物的能力。该菌株还因其作为水解细菌的功能而受到关注,它能发酵复杂的有机物质,并为其他营养类群(如硫酸盐还原菌和产甲烷菌)产生中间代谢产物。此外,据报道它参与了其分离源——大盐湖中的碳去除过程。这是Prevotella属代表性菌株的首个完整基因组序列,也是Halanaerobiaceae科模式菌株的第二个基因组序列。这个长度为2,309,262 bp的基因组,包含2,110个蛋白质编码基因和70个RNA基因,是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16e0/3156398/4354be76a0b9/sigs.1824509-f1.jpg

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