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水生嗜氢菌模式菌株(O)的全基因组序列

Complete genome sequence of Haliscomenobacter hydrossis type strain (O).

作者信息

Daligault Hajnalka, Lapidus Alla, Zeytun Ahmet, Nolan Matt, Lucas Susan, Del Rio Tijana Glavina, Tice Hope, Cheng Jan-Fang, Tapia Roxanne, Han Cliff, Goodwin Lynne, Pitluck Sam, Liolios Konstantinos, Pagani Ioanna, Ivanova Natalia, Huntemann Marcel, Mavromatis Konstantinos, Mikhailova Natalia, Pati Amrita, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Brambilla Evelyne-Marie, Rohde Manfred, Verbarg Susanne, Göker Markus, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter, Woyke Tanja

出版信息

Stand Genomic Sci. 2011 Jul 1;4(3):352-60. doi: 10.4056/sigs.1964579. Epub 2011 Jun 30.

DOI:10.4056/sigs.1964579
PMID:21886862
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3156403/
Abstract

Haliscomenobacter hydrossis van Veen et al. 1973 is the type species of the genus Haliscomenobacter, which belongs to order "Sphingobacteriales". The species is of interest because of its isolated phylogenetic location in the tree of life, especially the so far genomically uncharted part of it, and because the organism grows in a thin, hardly visible hyaline sheath. Members of the species were isolated from fresh water of lakes and from ditch water. The genome of H. hydrossis is the first completed genome sequence reported from a member of the family "Saprospiraceae". The 8,771,651 bp long genome with its three plasmids of 92 kbp, 144 kbp and 164 kbp length contains 6,848 protein-coding and 60 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

水生哈氏菌(Haliscomenobacter hydrossis)范·维恩等人于1973年发现,是哈氏菌属的模式种,属于“鞘脂杆菌目”。该物种因其在生命树中独特的系统发育位置而备受关注,尤其是其基因组中迄今尚未研究的部分,还因其菌体生长在一层薄而几乎不可见的透明鞘中。该物种的成员是从湖泊淡水和沟渠水中分离出来的。水生哈氏菌的基因组是“腐螺旋菌科”成员中首个完成测序的基因组序列。这个长度为8,771,651 bp的基因组及其三个长度分别为92 kbp、144 kbp和164 kbp的质粒,包含6,848个蛋白质编码基因和60个RNA基因,是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/10de13ad7237/sigs.1964579-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/27fbfd861512/sigs.1964579-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/43ace3cb6e5a/sigs.1964579-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/10de13ad7237/sigs.1964579-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/27fbfd861512/sigs.1964579-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/43ace3cb6e5a/sigs.1964579-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/251a/3156403/10de13ad7237/sigs.1964579-f3.jpg

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