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直接测量 DNA 介导的胶体相互作用及其定量建模。

Direct measurements of DNA-mediated colloidal interactions and their quantitative modeling.

机构信息

Department of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA 19104, USA.

出版信息

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15687-92. doi: 10.1073/pnas.1109853108. Epub 2011 Sep 6.

Abstract

DNA bridging can be used to induce specific attractions between small particles, providing a highly versatile approach to creating unique particle-based materials having a variety of periodic structures. Surprisingly, given the fact that the thermodynamics of DNA strands in solution are completely understood, existing models for DNA-induced particle interactions are typically in error by more than an order of magnitude in strength and a factor of two in their temperature dependence. This discrepancy has stymied efforts to design the complex temperature, sequence and time-dependent interactions needed for the most interesting applications, such as materials having highly complex or multicomponent microstructures or the ability to reconfigure or self-replicate. Here we report high-spatial resolution measurements of DNA-induced interactions between pairs of polystyrene microspheres at binding strengths comparable to those used in self-assembly experiments, up to 6 k(B)T. We also describe a conceptually straightforward and numerically tractable model that quantitatively captures the separation dependence and temperature-dependent strength of these DNA-induced interactions, without empirical corrections. This model was equally successful when describing the more complex and practically relevant case of grafted DNA brushes with self-interactions that compete with interparticle bridge formation. Together, our findings motivate a nanomaterial design approach where unique functional structures can be found computationally and then reliably realized in experiment.

摘要

DNA 桥接可用于诱导小颗粒之间的特定吸引力,为创建具有各种周期性结构的独特基于颗粒的材料提供了一种高度通用的方法。令人惊讶的是,考虑到溶液中 DNA 链的热力学已经被完全理解,现有的 DNA 诱导颗粒相互作用模型在强度上通常存在一个数量级的误差,在温度依赖性方面存在两倍的误差。这种差异阻碍了设计最有趣应用所需的复杂温度、序列和时变相互作用的努力,例如具有高度复杂或多组分微观结构的材料,或具有重新配置或自我复制能力的材料。在这里,我们报告了在与自组装实验中使用的结合强度相当的条件下,对聚苯乙烯微球之间的 DNA 诱导相互作用进行的高空间分辨率测量,最高可达 6 k(B)T。我们还描述了一种概念上简单且数值上易于处理的模型,该模型能够定量捕获这些 DNA 诱导相互作用的分离依赖性和温度依赖性强度,而无需经验修正。当描述具有与颗粒间桥形成竞争的自相互作用的接枝 DNA 刷的更复杂和实际相关的情况时,该模型同样成功。我们的研究结果共同激发了一种纳米材料设计方法,其中独特的功能结构可以通过计算找到,然后在实验中可靠地实现。

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