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Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules.正选择是否驱动转录因子结合位点的更替?利用果蝇顺式调控模块进行的检验。
PLoS Genet. 2011 Apr;7(4):e1002053. doi: 10.1371/journal.pgen.1002053. Epub 2011 Apr 28.
2
Changes in selective effects over time facilitate turnover of enhancer sequences.随着时间的推移,选择效应的变化促进了增强子序列的更替。
Genetics. 2011 Feb;187(2):567-82. doi: 10.1534/genetics.110.121590. Epub 2010 Nov 23.
3
The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts.不同启动子和环境背景下顺式作用结合位点的适应性景观。
PLoS Genet. 2010 Jul 29;6(7):e1001042. doi: 10.1371/journal.pgen.1001042.
4
Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species.结合位点更替在密切相关的果蝇物种之间产生转录因子结合的普遍定量变化。
PLoS Biol. 2010 Mar 23;8(3):e1000343. doi: 10.1371/journal.pbio.1000343.
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Human variation in short regions predisposed to deep evolutionary conservation.人类在短区域的进化保守性倾向的变异。
Mol Biol Evol. 2010 Jun;27(6):1279-88. doi: 10.1093/molbev/msq011. Epub 2010 Jan 21.
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Inferring binding energies from selected binding sites.从选定的结合位点推断结合能。
PLoS Comput Biol. 2009 Dec;5(12):e1000590. doi: 10.1371/journal.pcbi.1000590. Epub 2009 Dec 4.
7
Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.基于转录因子结合位点强度的调控区域自然选择的统计检验。
BMC Evol Biol. 2009 Dec 9;9:286. doi: 10.1186/1471-2148-9-286.
8
High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.通过合成饱和诱变对 DNA 调控元件进行高分辨率分析。
Nat Biotechnol. 2009 Dec;27(12):1173-5. doi: 10.1038/nbt.1589.
9
Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.从多态性和分化模式推断作用于人类候选顺式调控区域的进化过程。
PLoS Genet. 2009 Aug;5(8):e1000592. doi: 10.1371/journal.pgen.1000592. Epub 2009 Aug 7.
10
Evolution of regulatory sequences in 12 Drosophila species.12种果蝇物种中调控序列的进化
PLoS Genet. 2009 Jan;5(1):e1000330. doi: 10.1371/journal.pgen.1000330. Epub 2009 Jan 9.

证据表明,纯化选择作用于启动子序列。

Evidence that purifying selection acts on promoter sequences.

机构信息

Department of Ecology and Evolution, Committee on Genetics, Genomics and Systems Biology, Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois 60637, USA.

出版信息

Genetics. 2011 Nov;189(3):1121-6. doi: 10.1534/genetics.111.133637. Epub 2011 Sep 6.

DOI:10.1534/genetics.111.133637
PMID:21900262
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3213375/
Abstract

We tested whether functionally important sites in bacterial, yeast, and animal promoters are more conserved than their neighbors. We found that substitutions are predominantly seen in less important sites and that those that occurred tended to have less impact on gene expression than possible alternatives. These results suggest that purifying selection operates on promoter sequences.

摘要

我们测试了细菌、酵母和动物启动子中功能重要的位点是否比其相邻区域更保守。我们发现,取代主要发生在不太重要的位点,而且发生的取代对基因表达的影响往往小于可能的替代物。这些结果表明,启动子序列受到了净化选择的作用。