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CTCF 结合元件介导 V(D)J 重组的控制。

CTCF-binding elements mediate control of V(D)J recombination.

机构信息

Howard Hughes Medical Institute, The Children's Hospital, The Immune Disease Institute, Department of Genetics, Harvard Medical School, 300 Longwood Avenue, Boston, Massachusetts 02115, USA.

出版信息

Nature. 2011 Sep 11;477(7365):424-30. doi: 10.1038/nature10495.

DOI:10.1038/nature10495
PMID:21909113
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3342812/
Abstract

Immunoglobulin heavy chain (IgH) variable region exons are assembled from V(H), D and J(H) gene segments in developing B lymphocytes. Within the 2.7-megabase mouse Igh locus, V(D)J recombination is regulated to ensure specific and diverse antibody repertoires. Here we report in mice a key Igh V(D)J recombination regulatory region, termed intergenic control region 1 (IGCR1), which lies between the V(H) and D clusters. Functionally, IGCR1 uses CTCF looping/insulator factor-binding elements and, correspondingly, mediates Igh loops containing distant enhancers. IGCR1 promotes normal B-cell development and balances antibody repertoires by inhibiting transcription and rearrangement of D(H)-proximal V(H) gene segments and promoting rearrangement of distal V(H) segments. IGCR1 maintains ordered and lineage-specific V(H)(D)J(H) recombination by suppressing V(H) joining to D segments not joined to J(H) segments, and V(H) to DJ(H) joins in thymocytes, respectively. IGCR1 is also required for feedback regulation and allelic exclusion of proximal V(H)-to-DJ(H) recombination. Our studies elucidate a long-sought Igh V(D)J recombination control region and indicate a new role for the generally expressed CTCF protein.

摘要

免疫球蛋白重链(IgH)可变区外显子是在发育中的 B 淋巴细胞中从 V(H)、D 和 J(H)基因片段组装而成的。在 2.7 兆碱基对的小鼠 Igh 基因座内,V(D)J 重组受到调控,以确保特定和多样化的抗体库。在这里,我们在小鼠中报告了一个关键的 Igh V(D)J 重组调控区域,称为基因间控制区 1(IGCR1),它位于 V(H)和 D 簇之间。在功能上,IGCR1 使用 CTCF 环/绝缘子因子结合元件,并相应地介导包含远距离增强子的 Igh 环。IGCR1 通过抑制 D(H)近端 V(H)基因片段的转录和重排以及促进远端 V(H)片段的重排,促进正常 B 细胞发育和平衡抗体库。IGCR1 通过抑制未与 J(H)片段连接的 D 片段与 V(H)的连接,以及分别在胸腺细胞中 V(H)与 DJ(H)的连接,维持有序和谱系特异性的 V(H)(D)J(H)重组。IGCR1 还需要近端 V(H)到 DJ(H)重组的反馈调节和等位基因排斥。我们的研究阐明了一个长期以来寻求的 Igh V(D)J 重组调控区域,并表明一般表达的 CTCF 蛋白具有新的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/1fa08a5d5ac6/nihms320247f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/3aa760eb6446/nihms320247f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/af6e3e76e71e/nihms320247f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/b6841fec3b3e/nihms320247f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/3bf23080bef9/nihms320247f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/1fa08a5d5ac6/nihms320247f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/3aa760eb6446/nihms320247f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/af6e3e76e71e/nihms320247f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/b6841fec3b3e/nihms320247f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/3bf23080bef9/nihms320247f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f734/3342812/1fa08a5d5ac6/nihms320247f5.jpg

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Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9566-71. doi: 10.1073/pnas.1019391108. Epub 2011 May 23.
3
The distal V(H) gene cluster of the Igh locus contains distinct regulatory elements with Pax5 transcription factor-dependent activity in pro-B cells.
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