硫氧化化能自养菌 Tetrathiobacter kashmirensis 的全基因组鸟枪法测序。
Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis.
机构信息
Department of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
出版信息
J Bacteriol. 2011 Oct;193(19):5553-4. doi: 10.1128/JB.05781-11.
Abstract
The chemolithoautotrophic betaproteobacterium Tetrathiobacter kashmirensis belongs to the family Alcaligenaceae and is phylogenetically closely related to pathogens such as Taylorella and Bordetella species. While a complete inorganic sulfur oxidation gene cluster, soxCDYZAXWB, is present in its genome, pathogenicity islands or genes associated with virulence, disease, cellular invasion, and/or intracellular resistance are completely absent.
摘要
化能自养的β变形菌科的 Tetrathiobacter kashmirensis 属于产碱杆菌科，与病原体如泰勒菌属和百日咳鲍特菌属密切相关。尽管其基因组中存在完整的无机硫氧化基因簇 soxCDYZAXWB，但不存在与毒力、疾病、细胞侵袭和/或细胞内抗性相关的致病岛或基因。
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1
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2
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3
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
4
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Res Microbiol. 2007 May;158(4):330-8. doi: 10.1016/j.resmic.2006.12.013. Epub 2007 Mar 12.
5
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6
CAP3: A DNA sequence assembly program.CAP3：一个DNA序列组装程序。
Genome Res. 1999 Sep;9(9):868-77. doi: 10.1101/gr.9.9.868.
7
Evolution of the first metabolic cycles.首个代谢循环的演化
Proc Natl Acad Sci U S A. 1990 Jan;87(1):200-4. doi: 10.1073/pnas.87.1.200.
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