• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

定义全基因组关联扫描荟萃分析的能力限制。

Defining the power limits of genome-wide association scan meta-analyses.

机构信息

Wellcome Trust Centre for Human Genetics, Roosevelt Drive, University of Oxford, Oxford, United Kingdom.

出版信息

Genet Epidemiol. 2011 Dec;35(8):781-9. doi: 10.1002/gepi.20627. Epub 2011 Sep 15.

DOI:10.1002/gepi.20627
PMID:21922540
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3428938/
Abstract

Large-scale meta-analyses of genome-wide association scans (GWAS) have been successful in discovering common risk variants with modest and small effects. The detection of lower frequency signals will undoubtedly require concerted efforts of at least similar scale. We investigate the sample size-dictated power limits of GWAS meta-analyses, in the presence and absence of modest levels of heterogeneity and across a range of different allelic architectures. We find that data combination through large-scale collaboration is vital in the quest for complex trait susceptibility loci, but that effect size heterogeneity across meta-analyzed studies drawn from similar populations does not appear to have a profound effect on sample size requirements.

摘要

大规模的全基因组关联扫描(GWAS)元分析已经成功地发现了具有中等和小效应的常见风险变异。检测低频信号无疑需要至少类似规模的协同努力。我们研究了 GWAS 元分析在存在和不存在适度异质性以及在不同等位基因结构范围内的样本量决定的功效限制。我们发现,通过大规模合作进行数据组合对于寻找复杂性状易感性基因座至关重要,但来自相似人群的元分析研究中效应大小的异质性似乎对样本量要求没有深远的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/29a7912f5bcc/ukmss-37907-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/acdb39c18194/ukmss-37907-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/a58676a8c66e/ukmss-37907-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/aa591e3e9db4/ukmss-37907-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/29a7912f5bcc/ukmss-37907-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/acdb39c18194/ukmss-37907-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/a58676a8c66e/ukmss-37907-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/aa591e3e9db4/ukmss-37907-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c307/3428938/29a7912f5bcc/ukmss-37907-f0004.jpg

相似文献

1
Defining the power limits of genome-wide association scan meta-analyses.定义全基因组关联扫描荟萃分析的能力限制。
Genet Epidemiol. 2011 Dec;35(8):781-9. doi: 10.1002/gepi.20627. Epub 2011 Sep 15.
2
A robust method for genome-wide association meta-analysis with the application to circulating insulin-like growth factor I concentrations.一种稳健的全基因组关联荟萃分析方法及其在循环胰岛素样生长因子 I 浓度中的应用。
Genet Epidemiol. 2014 Feb;38(2):162-71. doi: 10.1002/gepi.21766. Epub 2013 Oct 25.
3
Interpretation of 10 years of Alzheimer's disease genetic findings in the perspective of statistical heterogeneity.从统计学异质性的角度解读 10 年来阿尔茨海默病的遗传发现。
Brief Bioinform. 2024 Mar 27;25(3). doi: 10.1093/bib/bbae140.
4
Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution.考虑祖先因素的全基因组关联研究的跨种族元回归增加了发现的效力并提高了精细定位分辨率。
Hum Mol Genet. 2017 Sep 15;26(18):3639-3650. doi: 10.1093/hmg/ddx280.
5
Design considerations for genetic linkage and association studies.基因连锁与关联研究的设计考量
Methods Mol Biol. 2012;850:237-62. doi: 10.1007/978-1-61779-555-8_13.
6
Power considerations for λ inflation factor in meta-analyses of genome-wide association studies.全基因组关联研究荟萃分析中λ膨胀因子的效能考量
Genet Res (Camb). 2016 May 19;98:e9. doi: 10.1017/S0016672316000069.
7
Across-cohort QC analyses of GWAS summary statistics from complex traits.复杂性状全基因组关联研究汇总统计数据的跨队列质量控制分析。
Eur J Hum Genet. 2016 Jan;25(1):137-146. doi: 10.1038/ejhg.2016.106. Epub 2016 Aug 24.
8
Accounting for heterogeneity due to environmental sources in meta-analysis of genome-wide association studies.在全基因组关联研究的荟萃分析中考虑环境来源引起的异质性。
Commun Biol. 2024 Nov 14;7(1):1512. doi: 10.1038/s42003-024-07236-9.
9
A novel random effect model for GWAS meta-analysis and its application to trans-ethnic meta-analysis.一种用于全基因组关联研究荟萃分析的新型随机效应模型及其在跨种族荟萃分析中的应用。
Biometrics. 2016 Sep;72(3):945-54. doi: 10.1111/biom.12481. Epub 2016 Feb 24.
10
Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.全基因组关联研究荟萃分析的欧洲和亚洲血统样本确定了三个与双相情感障碍相关的新位点。
Mol Psychiatry. 2013 Feb;18(2):195-205. doi: 10.1038/mp.2011.157. Epub 2011 Dec 20.

引用本文的文献

1
How do stochastic processes and genetic threshold effects explain incomplete penetrance and inform causal disease mechanisms?随机过程和遗传阈值效应如何解释不完全外显率并为因果疾病机制提供信息?
Philos Trans R Soc Lond B Biol Sci. 2024 Apr 22;379(1900):20230045. doi: 10.1098/rstb.2023.0045. Epub 2024 Mar 4.
2
Meta-analysis of genome-wide association studies reveal common loci controlling agronomic and quality traits in a wide range of normal and heat stressed environments.全基因组关联研究的荟萃分析揭示了在广泛的正常和热胁迫环境中控制农艺和品质性状的常见位点。
Theor Appl Genet. 2021 Jul;134(7):2113-2127. doi: 10.1007/s00122-021-03809-y. Epub 2021 Mar 25.
3

本文引用的文献

1
Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.三项全基因组关联研究的荟萃分析确定了结直肠癌易感性位点位于 1q41、3q26.2、12q13.13 和 20q13.33。
Nat Genet. 2010 Nov;42(11):973-7. doi: 10.1038/ng.670. Epub 2010 Oct 24.
2
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.荟萃分析确定了 13 个与腰围-臀围比相关的新位点,并揭示了脂肪分布遗传基础的性别二态性。
Nat Genet. 2010 Nov;42(11):949-60. doi: 10.1038/ng.685. Epub 2010 Oct 10.
3
Sport and exercise genomics: the FIMS 2019 consensus statement update.
运动与运动基因组学:2019年国际运动医学联合会共识声明更新
Br J Sports Med. 2020 Aug;54(16):969-975. doi: 10.1136/bjsports-2019-101532. Epub 2020 Mar 22.
4
Genetic Influences on Patient-Oriented Outcomes in Traumatic Brain Injury: A Living Systematic Review of Non-Apolipoprotein E Single-Nucleotide Polymorphisms.遗传对创伤性脑损伤患者结局的影响:非载脂蛋白 E 单核苷酸多态性的活体系统综述。
J Neurotrauma. 2021 Apr 15;38(8):1107-1123. doi: 10.1089/neu.2017.5583. Epub 2019 Jun 7.
5
Genome-wide association analysis identifies a meningioma risk locus at 11p15.5.全基因组关联分析鉴定出脑膜瘤风险位点位于 11p15.5。
Neuro Oncol. 2018 Oct 9;20(11):1485-1493. doi: 10.1093/neuonc/noy077.
6
Statistical and Computational Methods for Genetic Diseases: An Overview.遗传疾病的统计与计算方法:综述
Comput Math Methods Med. 2015;2015:954598. doi: 10.1155/2015/954598. Epub 2015 May 28.
7
Common polygenic variation and risk for childhood-onset schizophrenia.常见多基因变异与儿童期发病精神分裂症风险
Mol Psychiatry. 2016 Jan;21(1):94-6. doi: 10.1038/mp.2014.158. Epub 2014 Dec 16.
8
Detecting a weak association by testing its multiple perturbations: a data mining approach.通过测试其多种扰动来检测弱关联:一种数据挖掘方法。
Sci Rep. 2014 May 28;4:5081. doi: 10.1038/srep05081.
9
Meta-analysis methods for genome-wide association studies and beyond.全基因组关联研究的荟萃分析方法及其他。
Nat Rev Genet. 2013 Jun;14(6):379-89. doi: 10.1038/nrg3472. Epub 2013 May 9.
Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls.
冠状动脉疾病全基因组复制与荟萃分析(CARDIoGRAM)研究设计:一项涉及超过22000例病例和60000例对照的全基因组关联荟萃分析。
Circ Cardiovasc Genet. 2010 Oct;3(5):475-83. doi: 10.1161/CIRCGENETICS.109.899443. Epub 2010 Oct 5.
4
Hundreds of variants clustered in genomic loci and biological pathways affect human height.数以百计的变异体聚集在基因组位置和生物途径中,影响人类身高。
Nature. 2010 Oct 14;467(7317):832-8. doi: 10.1038/nature09410. Epub 2010 Sep 29.
5
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.通过大规模的关联分析确定了 12 个 2 型糖尿病易感位点。
Nat Genet. 2010 Jul;42(7):579-89. doi: 10.1038/ng.609.
6
Common SNPs explain a large proportion of the heritability for human height.常见的单核苷酸多态性解释了人类身高遗传的很大一部分。
Nat Genet. 2010 Jul;42(7):565-9. doi: 10.1038/ng.608. Epub 2010 Jun 20.
7
Comparing apples and oranges: equating the power of case-control and quantitative trait association studies.比较苹果和橙子:病例对照研究和数量性状关联研究的效能等同。
Genet Epidemiol. 2010 Apr;34(3):254-7. doi: 10.1002/gepi.20456.
8
Discovery properties of genome-wide association signals from cumulatively combined data sets.从累积合并数据集中发现全基因组关联信号的特性。
Am J Epidemiol. 2009 Nov 15;170(10):1197-206. doi: 10.1093/aje/kwp262. Epub 2009 Oct 6.
9
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.全基因组关联位点对人类疾病和性状的潜在病因学及功能影响。
Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7. doi: 10.1073/pnas.0903103106. Epub 2009 May 27.
10
Power of genetic association studies in the presence of linkage disequilibrium and allelic heterogeneity.连锁不平衡和等位基因异质性存在时基因关联研究的效能
Hum Hered. 2008;66(4):210-22. doi: 10.1159/000143404. Epub 2008 Jul 9.