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本文引用的文献

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Comparing the Predictions of the Nonlinear Poisson-Boltzmann Equation and the Ion Size-Modified Poisson-Boltzmann Equation for a Low-Dielectric Charged Spherical Cavity in an Aqueous Salt Solution.比较非线性泊松-玻尔兹曼方程和离子尺寸修正泊松-玻尔兹曼方程对盐水溶液中低介电常数带电球形腔的预测。
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The behavior of ions near a charged wall-dependence on ion size, concentration, and surface charge.离子在带电壁附近的行为-取决于离子大小、浓度和表面电荷。
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Coupling the Level-Set Method with Molecular Mechanics for Variational Implicit Solvation of Nonpolar Molecules.将水平集方法与分子力学相结合用于非极性分子的变分隐式溶剂化
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Simple and robust solver for the Poisson-Boltzmann equation.用于泊松-玻尔兹曼方程的简单且稳健的求解器。
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 2):016705. doi: 10.1103/PhysRevE.80.016705. Epub 2009 Jul 22.
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The influence of monovalent cation size on the stability of RNA tertiary structures.单价阳离子大小对RNA三级结构稳定性的影响。
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Darwinian biophysics: electrostatics and evolution in the kinetics of molecular binding.达尔文生物物理学:分子结合动力学中的静电学与进化
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7
Generalized Poisson-Fermi formalism for investigating size correlation effects with multiple ions.用于研究多离子尺寸相关效应的广义泊松-费米形式体系。
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Dec;78(6 Pt 1):061506. doi: 10.1103/PhysRevE.78.061506. Epub 2008 Dec 30.
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Dewetting and hydrophobic interaction in physical and biological systems.物理和生物系统中的去湿与疏水相互作用。
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9
Simulation of chemical potentials and phase equilibria in two- and three-dimensional square-well fluids: finite size effects.二维和三维方阱流体中化学势和相平衡的模拟:有限尺寸效应
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Electrostatic free energy and its variations in implicit solvent models.隐式溶剂模型中的静电自由能及其变化
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具有非均匀离子尺寸的离子尺寸效应的平均场描述:一种数值方法。

Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach.

作者信息

Zhou Shenggao, Wang Zhongming, Li Bo

机构信息

Department of Mathematics, Zhejiang University, No. 38 Zheda Road, Hangzhou, 310027, PR China.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 1):021901. doi: 10.1103/PhysRevE.84.021901. Epub 2011 Aug 1.

DOI:10.1103/PhysRevE.84.021901
PMID:21929014
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3727298/
Abstract

Ionic size effects are significant in many biological systems. Mean-field descriptions of such effects can be efficient but also challenging. When ionic sizes are different, explicit formulas in such descriptions are not available for the dependence of the ionic concentrations on the electrostatic potential, that is, there is no explicit Boltzmann-type distributions. This work begins with a variational formulation of the continuum electrostatics of an ionic solution with such nonuniform ionic sizes as well as multiple ionic valences. An augmented Lagrange multiplier method is then developed and implemented to numerically solve the underlying constrained optimization problem. The method is shown to be accurate and efficient, and is applied to ionic systems with nonuniform ionic sizes such as the sodium chloride solution. Extensive numerical tests demonstrate that the mean-field model and numerical method capture qualitatively some significant ionic size effects, particularly those for multivalent ionic solutions, such as the stratification of multivalent counterions near a charged surface. The ionic valence-to-volume ratio is found to be the key physical parameter in the stratification of concentrations. All these are not well described by the classical Poisson-Boltzmann theory, or the generalized Poisson-Boltzmann theory that treats uniform ionic sizes. Finally, various issues such as the close packing, limitation of the continuum model, and generalization of this work to molecular solvation are discussed.

摘要

离子尺寸效应在许多生物系统中都很显著。对这种效应的平均场描述可能很有效,但也具有挑战性。当离子尺寸不同时,此类描述中关于离子浓度对静电势的依赖关系没有明确的公式,也就是说,不存在明确的玻尔兹曼型分布。这项工作首先从具有这种非均匀离子尺寸以及多种离子价态的离子溶液的连续介质静电学的变分公式开始。然后开发并实施了一种增广拉格朗日乘数法来数值求解潜在的约束优化问题。结果表明该方法准确且高效,并应用于具有非均匀离子尺寸的离子系统,如氯化钠溶液。大量数值测试表明,平均场模型和数值方法定性地捕捉到了一些显著的离子尺寸效应,特别是对于多价离子溶液的效应,例如带电表面附近多价抗衡离子的分层。发现离子价与体积比是浓度分层中的关键物理参数。所有这些用经典的泊松 - 玻尔兹曼理论或处理均匀离子尺寸的广义泊松 - 玻尔兹曼理论都无法很好地描述。最后,讨论了诸如紧密堆积、连续介质模型的局限性以及将这项工作推广到分子溶剂化等各种问题。