SEPI de la ESCOM del Instituto Politécnico Nacional, Juan de Dios Bátiz y Miguel Othón de Mendizábal s/n, México DF, México.
Protein Sci. 2011 Dec;20(12):2035-46. doi: 10.1002/pro.740. Epub 2011 Nov 1.
Bax is a member of the Bcl-2 protein family that participates in mitochondrion-mediated apoptosis. In the early stages of the apoptotic pathway, this protein migrates from the cytosol to the outer mitochondrial membrane, where it is inserted and usually oligomerizes, making cytochrome c-compatible pores. Although several cellular and structural studies have been reported, a description of the stability of Bax at the molecular level remains elusive. This article reports molecular dynamics simulations of monomeric Bax at 300, 400, and 500 K, focusing on the most relevant structural changes and relating them to biological experimental results. Bax gradually loses its α-helices when it is submitted to high temperatures, yet it maintains its globular conformation. The resistance of Bax to adopt an extended conformation could be due to several interactions that were found to be responsible for maintaining the structural stability of this protein. Among these interactions, we found salt bridges, hydrophobic interactions, and hydrogen bonds. Remarkably, salt bridges were the most relevant to prevent the elongation of the structure. In addition, the analysis of our results suggests which conformational movements are implicated in the activation/oligomerization of Bax. This atomistic description might have important implications for understanding the functionality and stability of Bax in vitro as well as within the cellular environment.
Bax 是 Bcl-2 蛋白家族的一员,参与线粒体介导的细胞凋亡。在细胞凋亡途径的早期阶段,这种蛋白质从细胞质迁移到外线粒体膜,在那里它被插入并且通常寡聚化,形成与细胞色素 c 相容的孔道。尽管已经报道了一些细胞和结构研究,但 Bax 在分子水平上的稳定性描述仍然难以捉摸。本文报道了 300、400 和 500 K 下单体 Bax 的分子动力学模拟,重点关注最相关的结构变化,并将其与生物学实验结果相关联。当 Bax 受到高温时,它会逐渐失去其 α-螺旋,但仍保持其球状构象。Bax 抵抗采用延伸构象的能力可能是由于发现了几种相互作用,这些相互作用负责维持这种蛋白质的结构稳定性。在这些相互作用中,我们发现了盐桥、疏水相互作用和氢键。值得注意的是,盐桥是防止结构延伸的最相关因素。此外,我们结果的分析表明,哪些构象运动与 Bax 的激活/寡聚化有关。这种原子水平的描述可能对理解 Bax 在体外以及细胞环境中的功能和稳定性具有重要意义。