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通过时间依赖密度泛函理论预测高价铁 K 边吸收光谱。

Prediction of high-valent iron K-edge absorption spectra by time-dependent density functional theory.

机构信息

Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.

出版信息

Dalton Trans. 2011 Nov 14;40(42):11070-9. doi: 10.1039/c1dt11331c. Epub 2011 Sep 29.

Abstract

In recent years, a number of high-valent iron intermediates have been identified as reactive species in iron-containing metalloproteins. Inspired by the interest in these highly reactive species, chemists have synthesized Fe(IV) and Fe(V) model complexes with terminal oxo or nitrido groups, as well as a rare example of an Fe(VI)-nitrido species. In all these cases, X-ray absorption spectroscopy has played a key role in the identification and characterization of these species, with both the energy and intensity of the pre-edge features providing spectroscopic signatures for both the oxidation state and the local site geometry. Here we build on a time-dependent DFT methodology for the prediction of Fe K- pre-edge features, previously applied to ferrous and ferric complexes, and extend it to a range of Fe(IV), Fe(V) and Fe(VI) complexes. The contributions of oxidation state, coordination environment and spin state to the spectral features are discussed. These methods are then extended to calculate the spectra of the heme active site of P450 Compound II and the non-heme active site of TauD. The potential for using these methods in a predictive manner is highlighted.

摘要

近年来,一些高价铁中间体已被确定为含铁金属蛋白中的反应性物质。受这些高反应性物质的启发,化学家们合成了具有末端氧或氮化物基团的 Fe(IV) 和 Fe(V) 模型配合物,以及一个罕见的 Fe(VI)-氮化物物种的例子。在所有这些情况下,X 射线吸收光谱在这些物质的鉴定和表征中都发挥了关键作用,前边缘特征的能量和强度都为氧化态和局部位点几何结构提供了光谱特征。在这里,我们基于一种用于预测 Fe K-前边缘特征的时间依赖密度泛函理论方法,该方法以前曾应用于二价和三价配合物,并将其扩展到一系列 Fe(IV)、Fe(V) 和 Fe(VI) 配合物。讨论了氧化态、配位环境和自旋态对光谱特征的贡献。然后将这些方法扩展到计算 P450 化合物 II 的血红素活性位点和 TauD 的非血红素活性位点的光谱。强调了这些方法在预测性方面的应用潜力。

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