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本文引用的文献

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All-atom empirical potential for molecular modeling and dynamics studies of proteins.蛋白质分子建模和动力学研究的全原子经验势。
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Probing amyloid fibril growth by two-dimensional near-ultraviolet spectroscopy.二维近紫外光谱法探测淀粉样纤维的生长。
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Two-dimensional near-ultraviolet spectroscopy of aromatic residues in amyloid fibrils: a first principles study.二维近紫外光谱法研究淀粉样纤维中芳香族残基:从头算研究。
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Two-dimensional ultraviolet (2DUV) spectroscopic tools for identifying fibrillation propensity of protein residue sequences.用于识别蛋白质残基序列纤维化倾向的二维紫外(2DUV)光谱工具。
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Simulation of two-dimensional ultraviolet spectroscopy of amyloid fibrils.模拟淀粉样纤维的二维紫外光谱。
J Phys Chem B. 2010 Sep 23;114(37):12150-6. doi: 10.1021/jp1046968.
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Ultraviolet spectroscopy of protein backbone transitions in aqueous solution: combined QM and MM simulations.水溶液中蛋白质骨架转变的紫外光谱:QM 和 MM 模拟的结合。
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Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.分子聚集体中激子的相干多维光学光谱;准粒子与超分子视角
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Evidence for novel beta-sheet structures in Iowa mutant beta-amyloid fibrils.爱荷华突变体β-淀粉样蛋白原纤维中新型β-折叠结构的证据。
Biochemistry. 2009 Jul 7;48(26):6072-84. doi: 10.1021/bi9002666.
9
Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution.二维红外光谱和同位素标记以残基特异性分辨率确定了淀粉样蛋白形成的途径。
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10
Effects of the Arctic (E22-->G) mutation on amyloid beta-protein folding: discrete molecular dynamics study.北极(E22-->G)突变对淀粉样β蛋白折叠的影响:离散分子动力学研究。
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通过二维紫外(2DUV)光谱法鉴别阿尔茨海默病(AD)中的淀粉样纤维结构。

Distinguishing amyloid fibril structures in Alzheimer's disease (AD) by two-dimensional ultraviolet (2DUV) spectroscopy.

机构信息

Department of Chemistry, University of California, Irvine, Irvine, California 92697-2025, United States.

出版信息

Biochemistry. 2011 Nov 15;50(45):9809-16. doi: 10.1021/bi201317c. Epub 2011 Oct 20.

DOI:10.1021/bi201317c
PMID:21961527
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3458647/
Abstract

Understanding the aggregation mechanism of amyloid fibrils and characterizing their structures are important steps in the investigation of several neurodegenerative disorders associated with the misfolding of proteins. We report a simulation study of coherent two-dimensional chiral signals of three NMR structures of Aβ protein fibrils associated with Alzheimer's Disease, two models for Aβ(8-40) peptide wild-type (WT) and one for the Iowa (D23N) Aβ(15-40) mutant. Both far-ultraviolet (FUV) signals (λ = 190-250 nm), which originate from the backbone nπ* and ππ* transitions, and near-ultraviolet (NUV) signals (λ ≥ 250 nm) associated with aromatic side chains (Phe and Tyr) show distinct cross-peak patterns that can serve as novel signatures for the secondary structure.

摘要

了解淀粉样纤维的聚集机制并对其结构进行表征,是研究与蛋白质错误折叠相关的几种神经退行性疾病的重要步骤。我们报告了一项关于与阿尔茨海默病相关的三种 Aβ 蛋白纤维的 NMR 结构的相干二维手性信号的模拟研究,这两个模型是 Aβ(8-40)肽野生型(WT)和一个爱荷华州(D23N)Aβ(15-40)突变体。远紫外(FUV)信号(λ = 190-250nm),源于骨架 nπ* 和 ππ* 跃迁,以及与芳香侧链(Phe 和 Tyr)相关的近紫外(NUV)信号(λ≥250nm)都表现出明显的交叉峰模式,可作为二级结构的新特征。