Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Mol Ecol Resour. 2012 Jan;12(1):98-108. doi: 10.1111/j.1755-0998.2011.03076.x. Epub 2011 Oct 4.
It has been suggested that rbcL and matK are the core barcodes in plants, but they are not powerful enough to distinguish between closely related plant groups. Additional barcodes need to be evaluated to improve the level of discrimination between plant species. Because of their well-studied taxonomy and extreme diversity, we used Chinese Lysimachia (Myrsinaceae) species to test the performance of core barcodes (rbcL and matK) and two additional candidate barcodes (trnH-psbA and the nuclear ribosomal ITS); 97 accessions from four subgenus representing 34 putative Lysimachia species were included in this study. And many closely related species pairs in subgen. Lysimachia were covered to detect their discriminatory power. The inefficiency of rbcL and matK alone or combined in closely related plant groups was validated in this study. TrnH-psbA combined with rbcL + matK did not yet perform well in Lysimachia groups. In contrast, ITS, alone or combined with rbcL and/or matK, revealed high resolving ability in Lysimachia. We support ITS as a supplementary barcode on the basis of core barcode rbcL and matK. Besides, this study also illustrates several mistakes or underlying evolutionary events in Lysimachia detected by DNA barcoding.
有人认为 rbcL 和 matK 是植物的核心条形码,但它们不足以区分密切相关的植物群。需要评估其他条形码以提高植物物种之间的区分水平。由于它们的分类学研究得很好且具有极高的多样性,我们使用中国珍珠菜属(报春花科)物种来测试核心条形码(rbcL 和 matK)和两个附加候选条形码(trnH-psbA 和核核糖体 ITS)的性能;本研究包括了来自代表 34 种假定珍珠菜属物种的四个亚属的 97 个样本。并涵盖了许多亚属中的密切相关的种对,以检测它们的鉴别能力。本研究验证了 rbcL 和 matK 单独或组合在密切相关的植物群中的效率低下。相反,ITS 单独或与 rbcL 和/或 matK 组合,在珍珠菜属中显示出了很高的分辨率。我们支持将 ITS 作为核心条形码 rbcL 和 matK 的补充条形码。此外,本研究还说明了 DNA 条形码检测到的珍珠菜属中的几个错误或潜在的进化事件。