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SAPling:一种扫描-添加-打印条形码数据库系统,用于标记和跟踪无性生物。

SAPling: a Scan-Add-Print barcoding database system to label and track asexual organisms.

机构信息

170 Carl Icahn Laboratory, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.

出版信息

J Exp Biol. 2011 Nov 1;214(Pt 21):3518-23. doi: 10.1242/jeb.059048.

Abstract

We have developed a 'Scan-Add-Print' database system, SAPling, to track and monitor asexually reproducing organisms. Using barcodes to uniquely identify each animal, we can record information on the life of the individual in a computerized database containing its entire family tree. SAPling has enabled us to carry out large-scale population dynamics experiments with thousands of planarians and keep track of each individual. The database stores information such as family connections, birth date, division date and generation. We show that SAPling can be easily adapted to other asexually reproducing organisms and has a strong potential for use in large-scale and/or long-term population and senescence studies as well as studies of clonal diversity. The software is platform-independent, designed for reliability and ease of use, and provided open source from our webpage to allow project-specific customization.

摘要

我们开发了一个“扫描-添加-打印”(Scan-Add-Print)数据库系统 SAPling,用于跟踪和监测无性繁殖生物。我们使用条形码来唯一标识每个动物,并将其个体生命信息记录在一个包含其整个家族树的计算机化数据库中。SAPling 使我们能够对数以千计的涡虫进行大规模的种群动态实验,并跟踪每一个体。该数据库存储了诸如家族关系、出生日期、分裂日期和世代等信息。我们表明,SAPling 可以很容易地适应其他无性繁殖生物,并且具有在大规模和/或长期种群和衰老研究以及克隆多样性研究中应用的强大潜力。该软件是独立于平台的,旨在提高可靠性和易用性,并从我们的网页上提供开源,以允许针对特定项目进行定制。

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