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酿酒酵母核糖体蛋白L25结构-功能关系的体内和体外分析

In vivo and in vitro analysis of structure-function relationships in ribosomal protein L25 from Saccharomyces cerevisiae.

作者信息

Rutgers C A, Schaap P J, van 't Riet J, Woldringh C L, Raué H A

机构信息

Biochemisch Labatorium, Vrije Universiteit, Amsterdam, The Netherlands.

出版信息

Biochim Biophys Acta. 1990 Aug 27;1050(1-3):74-9. doi: 10.1016/0167-4781(90)90144-q.

DOI:10.1016/0167-4781(90)90144-q
PMID:2207171
Abstract

We have developed a combination of in vivo and in vitro methods which allows us to determine the effect of practically every structural change, deletions as well as point mutations, on various biological functions of a ribosomal protein (r-protein). We have used this approach to delineate the functional domains of r-protein L25 from Saccharomyces cerevisiae. By analysis of the intracellular distribution of fusion proteins carrying various portions of L25 linked to Escherichia coli beta-galactosidase we traced the nuclear localization signal(s) of L25 to the region encompassing the N-terminal 61 amino acids of the protein. On the other hand, using in vitro prepared fragments of L25 we located the domain responsible for its specific binding to 26S rRNA to the region between amino acids 61 and 135. In order to be able to analyze the effect of mutations in L25 on ribosome biogenesis and function in vivo we constructed a mutant yeast strain in which the chromosomal L25 gene is placed under control of the inducible yeast GAL promoter. Since this strain is unable to grow on glucose as a carbon source the L25 gene must be essential for cell viability. Growth on glucose can be restored by introduction of a wild-type L25 gene on a plasmid, demonstrating that under these conditions the cells are dependent upon an extrachromosomally supplied copy of the gene.

摘要

我们开发了一套体内和体外方法的组合,这使我们能够确定几乎每一种结构变化,包括缺失和点突变,对核糖体蛋白(r蛋白)各种生物学功能的影响。我们已使用这种方法来描绘酿酒酵母r蛋白L25的功能结构域。通过分析携带与大肠杆菌β-半乳糖苷酶相连的L25不同部分的融合蛋白的细胞内分布,我们将L25的核定位信号追溯到该蛋白N端61个氨基酸的区域。另一方面,使用体外制备的L25片段,我们将其与26S rRNA特异性结合的结构域定位到氨基酸61至135之间的区域。为了能够在体内分析L25突变对核糖体生物合成和功能的影响,我们构建了一个突变酵母菌株,其中染色体L25基因置于可诱导的酵母GAL启动子的控制之下。由于该菌株不能以葡萄糖作为碳源生长,因此L25基因对细胞活力必不可少。通过在质粒上引入野生型L25基因可以恢复在葡萄糖上的生长,这表明在这些条件下细胞依赖于该基因的染色体外供应拷贝。

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1
In vivo and in vitro analysis of structure-function relationships in ribosomal protein L25 from Saccharomyces cerevisiae.酿酒酵母核糖体蛋白L25结构-功能关系的体内和体外分析
Biochim Biophys Acta. 1990 Aug 27;1050(1-3):74-9. doi: 10.1016/0167-4781(90)90144-q.
2
The phylogenetically conserved doublet tertiary interaction in domain III of the large subunit rRNA is crucial for ribosomal protein binding.大亚基核糖体RNA结构域III中系统发育保守的双重三级相互作用对于核糖体蛋白结合至关重要。
Proc Natl Acad Sci U S A. 1993 Jan 1;90(1):213-6. doi: 10.1073/pnas.90.1.213.
3
Interaction of ribosomal proteins L25 from yeast and EL23 from E. coli with yeast 26S and mouse 28S rRNA.酵母核糖体蛋白L25和大肠杆菌EL23与酵母26S及小鼠28S rRNA的相互作用。
Biochimie. 1987 Sep;69(9):939-48. doi: 10.1016/0300-9084(87)90227-6.
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Identification and functional analysis of the nuclear localization signals of ribosomal protein L25 from Saccharomyces cerevisiae.酿酒酵母核糖体蛋白L25核定位信号的鉴定与功能分析。
J Mol Biol. 1991 Sep 5;221(1):225-37. doi: 10.1016/0022-2836(91)80216-h.
5
Mutational analysis of the C-terminal region of Saccharomyces cerevisiae ribosomal protein L25 in vitro and in vivo demonstrates the presence of two distinct functional elements.酿酒酵母核糖体蛋白L25 C端区域的体外和体内突变分析表明存在两个不同的功能元件。
J Mol Biol. 1994 Jul 15;240(3):243-55. doi: 10.1006/jmbi.1994.1438.
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All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae.酿酒酵母中,大核糖体亚基蛋白L25的所有三个功能结构域对于早期和晚期前体rRNA加工步骤都是必需的。
Nucleic Acids Res. 2001 Dec 15;29(24):5001-8. doi: 10.1093/nar/29.24.5001.
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Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60 S subunit formation.酿酒酵母25S核糖体RNA的结构域III:其在核糖体蛋白L25结合及60S亚基形成中的作用
J Mol Biol. 2000 Feb 11;296(1):7-17. doi: 10.1006/jmbi.1999.3432.
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Functional conservation between structurally diverse ribosomal proteins from Drosophila melanogaster and Saccharomyces cerevisiae: fly L23a can substitute for yeast L25 in ribosome assembly and function.黑腹果蝇和酿酒酵母结构多样的核糖体蛋白之间的功能保守性:果蝇L23a可在核糖体组装和功能中替代酵母L25
Nucleic Acids Res. 2007;35(13):4503-14. doi: 10.1093/nar/gkm428. Epub 2007 Jun 21.
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Yeast ribosomal protein L25 binds to an evolutionary conserved site on yeast 26S and E. coli 23S rRNA.酵母核糖体蛋白L25与酵母26S和大肠杆菌23S rRNA上的一个进化保守位点结合。
EMBO J. 1985 Aug;4(8):2101-7. doi: 10.1002/j.1460-2075.1985.tb03898.x.
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rRNA binding domain of yeast ribosomal protein L25. Identification of its borders and a key leucine residue.酵母核糖体蛋白L25的rRNA结合结构域。其边界和一个关键亮氨酸残基的鉴定。
J Mol Biol. 1991 Mar 20;218(2):375-85. doi: 10.1016/0022-2836(91)90719-m.

引用本文的文献

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Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.对三种酵母大核糖体亚基蛋白的亚基折叠贡献的分析,这些蛋白是中间核rRNA前体的稳定和加工所必需的。
PLoS One. 2021 Nov 23;16(11):e0252497. doi: 10.1371/journal.pone.0252497. eCollection 2021.
2
Charge versus sequence for nuclear/nucleolar localization of plant ribosomal proteins.植物核糖体蛋白的核/核仁定位的电荷与序列。
Plant Mol Biol. 2013 Mar;81(4-5):477-93. doi: 10.1007/s11103-013-0017-4. Epub 2013 Jan 29.
3
rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.
酵母细胞中大量核糖体大亚基蛋白缺失时 rRNA 的成熟。
PLoS One. 2009 Dec 11;4(12):e8249. doi: 10.1371/journal.pone.0008249.
4
Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development.拟南芥核糖体蛋白RPL23aA和RPL23aB被不同地靶向到核仁,并且在正常发育中具有不同的需求。
Plant Physiol. 2008 May;147(1):128-42. doi: 10.1104/pp.107.111799. Epub 2008 Mar 5.
5
Functional conservation between structurally diverse ribosomal proteins from Drosophila melanogaster and Saccharomyces cerevisiae: fly L23a can substitute for yeast L25 in ribosome assembly and function.黑腹果蝇和酿酒酵母结构多样的核糖体蛋白之间的功能保守性:果蝇L23a可在核糖体组装和功能中替代酵母L25
Nucleic Acids Res. 2007;35(13):4503-14. doi: 10.1093/nar/gkm428. Epub 2007 Jun 21.
6
All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae.酿酒酵母中,大核糖体亚基蛋白L25的所有三个功能结构域对于早期和晚期前体rRNA加工步骤都是必需的。
Nucleic Acids Res. 2001 Dec 15;29(24):5001-8. doi: 10.1093/nar/29.24.5001.
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Establishment of Arabidopsis thaliana ribosomal protein RPL23A-1 as a functional homologue of Saccharomyces cerevisiae ribosomal protein L25.拟南芥核糖体蛋白RPL23A-1作为酿酒酵母核糖体蛋白L25功能同源物的确立。
Plant Mol Biol. 2001 Aug;46(6):673-82. doi: 10.1023/a:1011612329398.
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A novel in vivo assay reveals inhibition of ribosomal nuclear export in ran-cycle and nucleoporin mutants.一种新型体内检测方法揭示了在 Ran 循环和核孔蛋白突变体中核糖体核输出受到抑制。
J Cell Biol. 1999 Feb 8;144(3):389-401. doi: 10.1083/jcb.144.3.389.
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The phylogenetically conserved doublet tertiary interaction in domain III of the large subunit rRNA is crucial for ribosomal protein binding.大亚基核糖体RNA结构域III中系统发育保守的双重三级相互作用对于核糖体蛋白结合至关重要。
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The conserved GTPase center and variable region V9 from Saccharomyces cerevisiae 26S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function.酿酒酵母26S rRNA中保守的GTP酶中心和可变区V9可以被来自其他原核生物或真核生物的等效物取代,而核糖体功能不会有可检测到的损失。
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