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植物种群中当代种子和花粉扩散率的联合估计。

Joint estimation of contemporary seed and pollen dispersal rates among plant populations.

机构信息

Department of Forest Ecology and Genetics, Forest Research Centre (CIFOR), INIA, Ctra. de la Coruña km 7.5, 28040 Madrid, Spain.

出版信息

Mol Ecol Resour. 2012 Mar;12(2):299-311. doi: 10.1111/j.1755-0998.2011.03092.x. Epub 2011 Nov 16.

DOI:10.1111/j.1755-0998.2011.03092.x
PMID:22085307
Abstract

There are few statistical methods for estimating contemporary dispersal among plant populations. A maximum-likelihood procedure is introduced here that uses pre- and post-dispersal population samples of biparentally inherited genetic markers to jointly estimate contemporary seed and pollen immigration rates from a set of discrete external sources into a target population. Monte Carlo simulations indicate that accurate estimates and reliable confidence intervals can be obtained using this method for both pollen and seed migration rates at modest sample sizes (100 parents/population and 100 offspring) when population differentiation is moderate (F(ST) ≥ 0.1), or by increasing pre-dispersal samples (to about 500 parents/population) when genetic divergence is weak (F(ST) = 0.01). The method exhibited low sensitivity to the number of source populations and achieved good accuracy at affordable genetic resolution (10 loci with 10 equifrequent alleles each). Unsampled source populations introduced positive biases in migration rate estimates from sampled sources, although they were minor when the proportion of immigration from the latter was comparatively low. A practical application of the method to a metapopulation of the Australian resprouter shrub Banksia attenuata revealed comparable levels of directional seed and pollen migration among dune groups, and the estimate of seed dispersal was higher than a previous estimate based on conservative assignment tests. The method should be of interest to researchers and managers assessing broad-scale nonequilibrium seed and pollen gene flow dynamics in plants.

摘要

目前几乎没有用于估计植物种群当代扩散的统计方法。本文介绍了一种最大似然程序,该程序使用双亲遗传标记的扩散前和扩散后种群样本,共同估计一组离散外部来源向目标种群的当代种子和花粉移民率。蒙特卡罗模拟表明,当种群分化适中(F(ST)≥0.1)时,该方法可以在适度的样本量(100 个亲本/种群和 100 个后代)下准确估计和获得可靠的置信区间,用于花粉和种子迁移率;或者当遗传差异较弱(F(ST)=0.01)时,可以通过增加扩散前样本(约 500 个亲本/种群)来实现。该方法对源种群数量的敏感性较低,在可承受的遗传分辨率(10 个位点,每个位点有 10 个等频等位基因)下达到了良好的准确性。未抽样的源种群会对抽样源的迁移率估计产生正向偏差,尽管当后者的移民比例相对较低时,这种偏差很小。该方法在对澳大利亚复叶灌木 Banksia attenuata 的复合种群的实际应用中,揭示了沙丘群体之间具有可比水平的定向种子和花粉迁移,并且种子扩散的估计值高于以前基于保守分配测试的估计值。该方法应该引起研究人员和管理者的兴趣,他们正在评估植物中广泛的非平衡种子和花粉基因流动态。

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