Popović Dragan M, Stuchebrukhov Alexei A
Department of Chemistry, University of California, Davis, CA, USA.
Biochim Biophys Acta. 2012 Apr;1817(4):506-17. doi: 10.1016/j.bbabio.2011.10.013. Epub 2011 Nov 6.
A combined DFT/electrostatic approach is employed to study the coupling of proton and electron transfer reactions in cytochrome c oxidase (CcO) and its proton pumping mechanism. The coupling of the chemical proton to the internal electron transfer within the binuclear center is examined for the O→E transition. The novel features of the His291 pumping model are proposed, which involve timely well-synchronized sequence of the proton-coupled electron transfer reactions. The obtained pK(a)s and E(m)s of the key ionizable and redox-active groups at the different stages of the O→E transition are consistent with available experimental data. The PT step from E242 to H291 is examined in detail for various redox states of the hemes and various conformations of E242 side-chain. Redox potential calculations of the successive steps in the reaction cycle during the O→E transition are able to explain a cascade of equilibria between the different intermediate states and electron redistribution between the metal centers during the course of the catalytic activity. All four electrometric phases are discussed in the light of the obtained results, providing a robust support for the His291 model of proton pumping in CcO.
采用密度泛函理论(DFT)与静电学相结合的方法来研究细胞色素c氧化酶(CcO)中质子和电子转移反应的耦合及其质子泵浦机制。针对O→E跃迁,研究了双核中心内化学质子与内部电子转移的耦合。提出了His291泵浦模型的新特点,其中涉及质子耦合电子转移反应及时良好同步的序列。在O→E跃迁的不同阶段获得的关键可电离和氧化还原活性基团的pK(a)值和E(m)值与现有实验数据一致。针对血红素的各种氧化还原状态和E242侧链的各种构象,详细研究了从E242到H291的质子转移步骤。对O→E跃迁过程中反应循环连续步骤的氧化还原电位计算能够解释不同中间态之间的一系列平衡以及催化活性过程中金属中心之间的电子重新分布。根据所得结果对所有四个电测阶段进行了讨论,为CcO中质子泵浦的His291模型提供了有力支持。