Suppr超能文献

来自铜绿假单胞菌的一种假定芳香酸脱羧酶PA4019的结构

Structure of PA4019, a putative aromatic acid decarboxylase from Pseudomonas aeruginosa.

作者信息

Kopec Jolanta, Schnell Robert, Schneider Gunter

机构信息

Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 77 Stockholm, Sweden.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Oct 1;67(Pt 10):1184-8. doi: 10.1107/S174430911102923X. Epub 2011 Sep 24.

Abstract

The ubiX gene (PA4019) of Pseudomonas aeruginosa has been annotated as encoding a putative 3-octaprenyl-4-hydroxybenzoate decarboxylase from the ubiquinone-biosynthesis pathway. Based on a transposon mutagenesis screen, this gene was also implicated as being essential for the survival of this organism. The crystal structure of recombinant UbiX determined to 1.5 Å resolution showed that the protein belongs to the superfamily of homo-oligomeric flavine-containing cysteine decarboxylases. The enzyme assembles into a dodecamer with 23 point symmetry. The subunit displays a typical Rossmann fold and contains one FMN molecule bound at the interface between two subunits.

摘要

铜绿假单胞菌的ubiX基因(PA4019)已被注释为编码一种来自泛醌生物合成途径的推定3-辛基-4-羟基苯甲酸脱羧酶。基于转座子诱变筛选,该基因也被认为对该生物体的存活至关重要。确定分辨率为1.5 Å的重组UbiX晶体结构表明,该蛋白质属于含黄素的同型寡聚半胱氨酸脱羧酶超家族。该酶组装成具有23点对称性的十二聚体。亚基呈现典型的罗斯曼折叠,并且在两个亚基之间的界面处含有一个结合的FMN分子。

相似文献

1
Structure of PA4019, a putative aromatic acid decarboxylase from Pseudomonas aeruginosa.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Oct 1;67(Pt 10):1184-8. doi: 10.1107/S174430911102923X. Epub 2011 Sep 24.
2
Structural insights into the UbiD protein family from the crystal structure of PA0254 from Pseudomonas aeruginosa.
PLoS One. 2013 May 9;8(5):e63161. doi: 10.1371/journal.pone.0063161. Print 2013.
4
UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis.
Nature. 2015 Jun 25;522(7557):502-6. doi: 10.1038/nature14559. Epub 2015 Jun 17.
5
Crystal structure of a dodecameric FMN-dependent UbiX-like decarboxylase (Pad1) from Escherichia coli O157: H7.
Protein Sci. 2004 Nov;13(11):3006-16. doi: 10.1110/ps.04953004. Epub 2004 Sep 30.
7
Characterization of the FMN-Dependent Cysteine Decarboxylase from Thioviridamide Biosynthesis.
Org Lett. 2019 Jun 21;21(12):4676-4679. doi: 10.1021/acs.orglett.9b01531. Epub 2019 Jun 3.
10
Structure of MrsD, an FAD-binding protein of the HFCD family.
Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1414-21. doi: 10.1107/s0907444903011831. Epub 2003 Jul 23.

引用本文的文献

1
Enzymatic Conversion of CO: From Natural to Artificial Utilization.
Chem Rev. 2023 May 10;123(9):5702-5754. doi: 10.1021/acs.chemrev.2c00581. Epub 2023 Jan 24.
2
The In Vitro Production of prFMN for Reconstitution of UbiD Enzymes.
Methods Mol Biol. 2021;2280:219-227. doi: 10.1007/978-1-0716-1286-6_14.
3
N5 Is the New C4a: Biochemical Functionalization of Reduced Flavins at the N5 Position.
Front Mol Biosci. 2020 Oct 30;7:598912. doi: 10.3389/fmolb.2020.598912. eCollection 2020.
4
deletion mitigates respiratory deficiency caused by mutations in the gene encoding the coenzyme Q chaperone protein Coq10.
J Biol Chem. 2020 May 1;295(18):6023-6042. doi: 10.1074/jbc.RA119.012420. Epub 2020 Mar 23.
5
Coenzyme Q biosynthesis in the biopesticide Shenqinmycin-producing Pseudomonas aeruginosa strain M18.
J Ind Microbiol Biotechnol. 2019 Jul;46(7):1025-1038. doi: 10.1007/s10295-019-02179-1. Epub 2019 Apr 12.
6
New cofactor supports α,β-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition.
Nature. 2015 Jun 25;522(7557):497-501. doi: 10.1038/nature14560. Epub 2015 Jun 17.
7
UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis.
Nature. 2015 Jun 25;522(7557):502-6. doi: 10.1038/nature14559. Epub 2015 Jun 17.
8
Structure and Mechanism of Ferulic Acid Decarboxylase (FDC1) from Saccharomyces cerevisiae.
Appl Environ Microbiol. 2015 Jun 15;81(12):4216-23. doi: 10.1128/AEM.00762-15. Epub 2015 Apr 10.

本文引用的文献

1
REFMAC5 for the refinement of macromolecular crystal structures.
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. doi: 10.1107/S0907444911001314. Epub 2011 Mar 18.
2
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W529-33. doi: 10.1093/nar/gkq399. Epub 2010 May 16.
3
PAD1 and FDC1 are essential for the decarboxylation of phenylacrylic acids in Saccharomyces cerevisiae.
J Biosci Bioeng. 2010 Jun;109(6):564-9. doi: 10.1016/j.jbiosc.2009.11.011. Epub 2009 Dec 16.
4
Dali server: conservation mapping in 3D.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W545-9. doi: 10.1093/nar/gkq366. Epub 2010 May 10.
5
Features and development of Coot.
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. doi: 10.1107/S0907444910007493. Epub 2010 Mar 24.
6
Tracking flavin conformations in protein crystal structures with Raman spectroscopy and QM/MM calculations.
Angew Chem Int Ed Engl. 2010 Mar 22;49(13):2324-7. doi: 10.1002/anie.200907143.
7
MolProbity: all-atom structure validation for macromolecular crystallography.
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21. doi: 10.1107/S0907444909042073. Epub 2009 Dec 21.
8
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
9
The use of systematic N- and C-terminal deletions to promote production and structural studies of recombinant proteins.
Protein Expr Purif. 2008 Apr;58(2):210-21. doi: 10.1016/j.pep.2007.11.008. Epub 2007 Nov 22.
10
The role of UbiX in Escherichia coli coenzyme Q biosynthesis.
Arch Biochem Biophys. 2007 Nov 15;467(2):144-53. doi: 10.1016/j.abb.2007.08.009. Epub 2007 Aug 23.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验