Children's Hospital Informatics Program, Children's Hospital Boston, Boston, Massachusetts 02115, USA.
Genome Res. 2012 Mar;22(3):421-8. doi: 10.1101/gr.127845.111. Epub 2012 Jan 6.
There is an emerging consensus that when investigators obtain genomic data from research participants, they may incur an ethical responsibility to inform at-risk individuals about clinically significant variants discovered during the course of their research. With whole-exome sequencing becoming commonplace and the falling costs of full-genome sequencing, there will be an increasingly large number of variants identified in research participants that may be of sufficient clinical relevance to share. An explicit approach to triaging and communicating these results has yet to be developed, and even the magnitude of the task is uncertain. To develop an estimate of the number of variants that might qualify for disclosure, we apply recently published recommendations for the return of results to a defined and representative set of variants and then extrapolate these estimates to genome scale. We find that the total number of variants meeting the threshold for recommended disclosure ranges from 3955-12,579 (3.79%-12.06%, 95% CI) in the most conservative estimate to 6998-17,189 (6.69%-16.48%, 95% CI) in an estimate including variants with variable disease expressivity. Additionally, if the growth rate from the previous 4 yr continues, we estimate that the total number of disease-associated variants will grow 37% over the next 4 yr.
越来越多的人认为,当研究人员从研究参与者那里获得基因组数据时,他们可能有道德责任告知有风险的个体在研究过程中发现的具有临床意义的变异。随着外显子组测序变得普遍,全基因组测序的成本降低,研究参与者中可能会发现越来越多具有足够临床相关性的变异,这些变异可能具有分享的价值。目前尚未制定明确的方法来对这些结果进行分类和传达,甚至这项任务的规模也不确定。为了估计可能有资格披露的变异数量,我们将最近发表的结果回报建议应用于一组定义明确且具有代表性的变异,然后将这些估计值外推到基因组规模。我们发现,在最保守的估计中,符合建议披露阈值的变异总数为 3955-12579(3.79%-12.06%,95%CI),在包括疾病表达可变的变异的估计中为 6998-17189(6.69%-16.48%,95%CI)。此外,如果前 4 年的增长率持续下去,我们估计在未来 4 年内,与疾病相关的变异总数将增长 37%。